Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2909g00004 ATGTCGAATCAAGTGGTCAAAGTGAAGAGAGACACGATTGAAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACCACTATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAGGAATTAGAATGCTGTCCAATGTGCAACATTGATTTGGGTTGTGTTCCACTCGAGAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAGGCGCCTGAAGTTGTCGCCTCATTACCATTACCAGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCGAGGGTATCTACACAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGCAGTCTGCGGACCTCTAGTTTTTCCATTGAAAAGCCTATTAAAAAAGAGGAAGAATTACTGGAAGATCATCCTGAGAGTTCAAGCTCACCTGACACTTCAAATAAGTTTGCTCAGAATACTGGACAGAGTGTGACCCCTTGTGAGGGTAGTCAATCCATACCCAATAAAGAAGAGAATGGTGCTGAACCATGGGATGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAGGTCGCAAGTAGGAGTAAATCTTTCAAGTCTAATGTGCAAGGGTCTGATGCTAAACTAGAATCCATTCAAGTAAATGAGAGTGACTCTCAAGTGCAGAAAACCAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAGATTAGCCCTTATTCTGTCTCTTCAGATACAGTAAAACCCAATAAATTGCGCAGAGTACGCAGGAAAAAGGAGCCTGCTTTTGGAGAATCAGGCATATCACCCCAAGCTGTGCTGGATTCTACCAGCAACAAGCTCTTAAGGACTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGATGGAGATGCACCATTGCCCCAGATTCCTGCAAGTTATGTGAGAATAAAGGATGGAACCGTACCTGTCTCATTTATCCAAAAATACCTAATGAAGAAACTAGATTTGACCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGAGGCTCCATAACTTGATTGAGTTGTGGCTGGATACGGCATCCACATCACAGCGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTCTTGGCTTATGCTCGGAAGGTTCACCATCCTTGA 1284 0.4291 MSNQVVKVKRDTIEACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPMCNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVASLPLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASSLRTSSFSIEKPIKKEEELLEDHPESSSSPDTSNKFAQNTGQSVTPCEGSQSIPNKEENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSNVQGSDAKLESIQVNESDSQVQKTKNKENKRKAKVEDEKISPYSVSSDTVKPNKLRRVRRKKEPAFGESGISPQAVLDSTSNKLLRTGPIWFSLVASENQDGDAPLPQIPASYVRIKDGTVPVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLRLHNLIELWLDTASTSQRIPATIGSSAKDFVMVLAYARKVHHP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2909g00004 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 425 IPR044807 GO:0004842
Gabi2909g00004 427 MobiDBLite consensus disorder prediction 166 197 - -
Gabi2909g00004 427 SMART ring_2 19 59 IPR001841 -
Gabi2909g00004 427 MobiDBLite consensus disorder prediction 110 201 - -
Gabi2909g00004 427 Pfam RING-type zinc-finger 19 48 IPR027370 -
Gabi2909g00004 427 MobiDBLite consensus disorder prediction 149 165 - -
Gabi2909g00004 427 MobiDBLite consensus disorder prediction 250 267 - -
Gabi2909g00004 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Gabi2909g00004 427 MobiDBLite consensus disorder prediction 228 249 - -
Gabi2909g00004 427 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Gabi2909g00004 427 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Gabi2909g00004 427 MobiDBLite consensus disorder prediction 228 267 - -
Gabi2909g00004 427 CDD RING-HC_PCGF 17 60 - -
Gabi2909g00004 427 MobiDBLite consensus disorder prediction 112 148 - -
Gabi2909g00004 427 SUPERFAMILY RING/U-box 12 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2909g00004 Gabi-Chr2909 52302 58419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2909g00004 2 346 C3H Transcription Factor Family AT2G30580 54.598 1.52e-113 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2909g00004 K16277 - gmx:100793731 743.036