LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2909g00002	ATGGAGGAGGTTGAAGAAGCTAACAGAGCAGCTGTTGAAAGCTGTCATAGAGTTCTAAGTATGTTGTCTCAGCCTCAGGATCAAGTTCAGTATAGGAACTTAATGGTGGAGACTGGAGAGGCTGAAGTGAGGTTTAAGAAAGTTGTTTCCCTGCTCAGTGATGGTTTGGGTCATGCAAGAGTGAGGAAACTCAAAAAACTCCAAATCCCTTTTTCGAAAAGTATCCTCTTGGAAAATCCAAATTGCAGAATCAGACATCAATCAAAAAATCTGCAGTTTCCTCAAACTATTTTTCCTGACAATTCAGTTCAGGAATTGGGTTCAACTGTCAGAAATTCACTCTGTCTGGGAAACCCGTCTTTGGAATTGAGCTCCAATGGGAAAAGTCCTCTTCACCTTAACCAACAATCGTCATCAATTCACTACCACATCCTTCAGCAGCAACAACAAAGGTTATTACTGCATCAGCAGCAGATGAAACATCAAGCAGAAATGATGTTCCGAAAGAATAATAGTGTCGTAAATCTGAATTTTGATAGCTCTAACTGCACACCTTCAATGTCATCTACTAGGTCTTTCATTTCTTCCTTGAGCATAGATGGAAGTGTGGCTAATTTGGATGGAAGTGCCTTTCATTTAATAGGAGCTTCACACTCCTCAGATCAGAATTCCCAACAGCACAAGAGAAAATGTTCTGCCAGAGGTGATGAGGGTAGCGTGAAATGTGGGAGCAGTGCTACTGCTAGATGCCATTGCTCAAAGAAGAGGAAAAATAGAGTGAAAAGATCAATTAAGGTGCCTGCTATTAGCAACAAACTTGCAGATATCCCTCCAGATGATTATTCATGGAGGAAGTACGGACAGAAGCCAATTAAGGGGTCACCTCACCCTAGGGGATACTATAAGTGCAGCAGCTTGAGAGGCTGCCCTGCTAGGAAGCATGTGGAGAGGTGCTTGGAAGAGCCTAACATGCTAGTTGTTACCTATGAAGGCGACCACAACCACCCAAAATTACCAACACAATCCGCAAATGCATGA	1038	0.4258	MEEVEEANRAAVESCHRVLSMLSQPQDQVQYRNLMVETGEAEVRFKKVVSLLSDGLGHARVRKLKKLQIPFSKSILLENPNCRIRHQSKNLQFPQTIFPDNSVQELGSTVRNSLCLGNPSLELSSNGKSPLHLNQQSSSIHYHILQQQQQRLLLHQQQMKHQAEMMFRKNNSVVNLNFDSSNCTPSMSSTRSFISSLSIDGSVANLDGSAFHLIGASHSSDQNSQQHKRKCSARGDEGSVKCGSSATARCHCSKKRKNRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERCLEEPNMLVVTYEGDHNHPKLPTQSANA	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2909g00002	345	Gene3D	WRKY domain	263	339	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2909g00002	345	SUPERFAMILY	WRKY DNA-binding domain	275	337	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2909g00002	345	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	2	343	IPR044810	GO:0003700
	Gabi2909g00002	345	SMART	WRKY_cls	277	337	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2909g00002	345	MobiDBLite	consensus disorder prediction	218	238	-	-
	Gabi2909g00002	345	ProSiteProfiles	WRKY domain profile.	272	338	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2909g00002	345	Pfam	WRKY DNA -binding domain	279	336	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2909g00002	345	Pfam	Plant zinc cluster domain	228	275	IPR018872	-
	Gabi2909g00002	345	FunFam	WRKY transcription factor 65	261	338	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2909g00002	Gabi-Chr2909	24468	27248	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2909g00002	1	342	WRKY Transcription Factor Family	AT2G30590	55.181	2.95e-123	357

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi2909g00002		WRKY	1.3e-25	CL0274