Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2909g00001 ATGCCTATTGACGCGCTTCCGATTCGGAAGGACTCTCCGCCGTCGTCGAAACCCGTGAGCTGCGGCGGTCCTCTGCCCAAGGAGGCGCATTTCAGGGGAGTGCGGAAGCGTCCATGGGGCCGTTTCGCCGCCGAGATCCGTGATCCTTGGAGGAAGACCCGCAAGTGGCTTGGCACCTTTGACACAGCCGAGGAAGCCGCCAGGGCCTACGACAACGCCGCCAGGAGCCTCCGTGGGCCCAAGGCCAAGACCAACTTCGCCTACGTCGTTGCTCCCCCTATTCGACTGCCACCCGCGGAGGTCGCTGCCCCCGCCGCCGGGAACGTGTTTTGGGTTCCTCCGGGGTACTTCGTGACGGATGTAGCAGCTCCGGTGAGGTCGGAGTACAAGGGTTACATATTGGAGAATATTGTGGTCAACAACGAGGAGGAAGAAGAGAAGAAGCCATTCTTGTTCGATCTTAACGAGCCAGCGCCGCTCTTCTGA 486 0.6091 MPIDALPIRKDSPPSSKPVSCGGPLPKEAHFRGVRKRPWGRFAAEIRDPWRKTRKWLGTFDTAEEAARAYDNAARSLRGPKAKTNFAYVVAPPIRLPPAEVAAPAAGNVFWVPPGYFVTDVAAPVRSEYKGYILENIVVNNEEEEEKKPFLFDLNEPAPLF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2909g00001 161 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Gabi2909g00001 161 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Gabi2909g00001 161 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Gabi2909g00001 161 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Gabi2909g00001 161 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Gabi2909g00001 161 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Gabi2909g00001 161 MobiDBLite consensus disorder prediction 1 29 - -
Gabi2909g00001 161 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Gabi2909g00001 161 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Gabi2909g00001 161 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 106 - -
Gabi2909g00001 161 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2909g00001 Gabi-Chr2909 10501 11207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2909g00001 25 86 AP2-EREBP Transcription Factor Family AT5G44210 82.258 3.94e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2909g00001 AP2 6.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2909g00001 K09286 - gmx:100816599 198.364