Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2901g00036 ATGGCTCGCGGAAGGGTTCAGCTGAAGCGTATTGAGAACTCAGTGCACAGACAAGTTACCTTCTGCAAGCGTCGAGCAGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGAACCATGCAAGGGCTTATAGAGAGGTACATGAAGTTCACACGACCTGAAGCGGTCCCCGAAGCACTTCCTCTGGATGCTAAAGAGGAAACCCATATCCTAAAACAAGAAATCGAAACATTGCAAAAGGGTATCAGGTACTTGCTTGGAGGAGGAATTGGGACAATGACAATTGATGAGTTACAAGTGGTAGAGAAGAATCTCGAAATTTGGATTTATCAGATTCGTTCAATGAAGATGAACATCATGTTACAAGAAATTCAAGCTTTGAGAGATAAGGAGGGGACACTTAAAGCGGCAAATAAATATCTCCAGGATAAGATTGTGGAGAATACTGCAGTGACTAACTTTGATCCTTTTGGTACTGATTTTTCGTACCCACTAATTATACAAGATGGAATTTTTCAGCTCTAG 594 0.431 MARGRVQLKRIENSVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIERYMKFTRPEAVPEALPLDAKEETHILKQEIETLQKGIRYLLGGGIGTMTIDELQVVEKNLEIWIYQIRSMKMNIMLQEIQALRDKEGTLKAANKYLQDKIVENTAVTNFDPFGTDFSYPLIIQDGIFQL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2901g00036 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 144 - -
Gabi2901g00036 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gabi2901g00036 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2901g00036 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2901g00036 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2901g00036 197 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Gabi2901g00036 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2901g00036 197 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2901g00036 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2901g00036 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2901g00036 197 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Gabi2901g00036 197 Gene3D - 14 78 IPR036879 GO:0003677|GO:0046983
Gabi2901g00036 197 Pfam K-box region 88 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2901g00036 Gabi-Chr2901 371510 375853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2901g00036 1 197 MADS-box Gene Family AT1G71692 60.849 1.07e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2901g00036 K-box 5.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2901g00036 - - gmx:100783345 323.168