Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2901g00025 ATGGACGCTCTCGATTCGAACCCTAACCCGCCTCTTCTTCCTTCCTACGATCCACCTCCACAGAACTTTTCAGCACCAGAGTATCACAATCCATCAGAAACCCTAGCTTCCGATGGTCAAAACTCTAACGGTAATAACGACAGTGGCCACGGAAACCCATCGGAGAACGGCCAGGGCGCTGCTAATGATAACAATTCACGGCCTCAGATCTCGAAACCCTTGGTCTCCGAGAACGGGTTGACCGGTACTACCCGGAGCGGCACCGACAAGGATCAATCTGGCGGCGAGGAGGAGACTACTAGCAAGCGCCGCCGTCGAAGCCGTTGGGACCCGCAGCCGGATTCCAACGACCAGAGCGGTGGCGAATCGGGTGCTGCCGGAACGAAGAGGAGGAAATCCCGTTGGGCCGATGACGAGCCAAAGCCGGTGATTCAACTTCCTGATTTCATGGGTGGTATTGAATTTGATCCCGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGAATGCTACAATCAGGTTTGCCTTTGGATGATCGCCCAGAAGGTGCTCGATCACCTTCGCCTGAACCTATATATGATAATATGGGCATTAGAATTAACACCAGAGAATATCGTGCGCGAGAGAGATTGCAAAAGGAGAGGCAGGAAATTATATCTCAGATTATAAAGAAAAACCCCGCGTTTAAGCCACCTGCAGATTATAGGCCACCAAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATATCCTGGTTACAATTTCATAGGGCTTATTATTGGTCCTAGAGGTAACACTCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTAGAGGTAAAGGATCGGTGAAAGAAGGCAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCGGAAAATGAAGATTTGCATGTTTTAGTGGAGGCAGAGACGCCAGAATCGCTTGAAGCTGCTGCAGGTATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCCTTAAATGGGACGATTAGGGATGAAGAGTATTGCCGGTTGTGTGGTGAACCCGGTCATAGGCAATATGCTTGTCCTACAAGGACTTCAACATTTAAGAGCGAAGTTGTTTGTAAGCATTGTGGGGACGGTGGTCATCCAAGTATAGATTGTCCTGTAAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGTTCAGTTCCTGAATCTGCAACAAAGCAAACCAGTACGTTGGCAATTGGTTCGGGCAATTCTGGAGGCAATCCTCCTTGGGCTAACAATTCTGGTTCAACTGGTGGTGTACCACAAGCTGGCCTAGGGGCTAGTGCAGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGATATTTGCCACCCACTCTTGATGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTAATGGCAAAAGTTATCAAGGATCGAATATCAGGTTTAAGTAAAGGATACGGGTTTGTGAAATATGCTGATATCACAATGGCAAACAATGCGATTTTGGCAATGAATGGTTATCGCCTTGAGGGCCGAACCATTGCTGTCAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCAGCATCTGCTGTGCCCACTTATCCTGTTCCAAGCCAACCACATGGCGCCTATCCTTCCCAACAGTATGCTGCCGGTGGTCCTCTTGGGAGTGCTCCCCCTGGGAGTTATGGTGGTACCCCAGTCCCATGGGGACCTCCCGTTCCTCCTCCATATGCCCCTTATGCGCCTCCTCCACCTGGGTCAACAATGTATCCTTCGATGCAAGGTCAACCCATGCCTCATTATGGTGTTCAATATCCTCCTGTCCCAACAGGCCCCCCTGGTGCCCCATCCCAGCCTGCAACTTCTGGTGAAATGCAGCAGAGTTACCCTCCTGGAGTGCAATCTGACAATAGCACTTCTACTCAGTCTCTACCAGCGAATATGTATGGGAACGCGATACCTTCAATGCCACCAGCAGCTCAACCTACATACCCTGCATCTTATGGATATCCACCATACTACAGCGCAGTTCCTCCACCACCTCCCCCTCCTGCTCACATTCCTGTCTCGACATCAAATGTGCCTTGGGCCAGTAATCCTATGGTGCCACCTCATGCTTCGTCTGCTGAGAAGACAACGTATGGTGCTGATCAGTCCCAGAGCATTGGTAATGTGCCTTGGGCCACAAATCCACCAGTGCCTTCTCCTGTTTCATCAGCTGAGAAGACATCACATGGTGCTGATTCAGAGTACGAGAAGTTCATGGCAGAGATGAAATGA 2406 0.4892 MDALDSNPNPPLLPSYDPPPQNFSAPEYHNPSETLASDGQNSNGNNDSGHGNPSENGQGAANDNNSRPQISKPLVSENGLTGTTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQSGGESGAAGTKRRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGSGNSGGNPPWANNSGSTGGVPQAGLGASAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRISGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPHGAYPSQQYAAGGPLGSAPPGSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPSMQGQPMPHYGVQYPPVPTGPPGAPSQPATSGEMQQSYPPGVQSDNSTSTQSLPANMYGNAIPSMPPAAQPTYPASYGYPPYYSAVPPPPPPPAHIPVSTSNVPWASNPMVPPHASSAEKTTYGADQSQSIGNVPWATNPPVPSPVSSAEKTSHGADSEYEKFMAEMK 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 439 460 - -
Gabi2901g00025 801 FunFam splicing factor-like protein 1 234 362 - -
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 1 143 - -
Gabi2901g00025 801 FunFam splicing factor 1 362 415 - -
Gabi2901g00025 801 ProSiteProfiles Zinc finger CCHC-type profile. 364 378 IPR001878 GO:0003676|GO:0008270
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 90 112 - -
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 559 605 - -
Gabi2901g00025 801 SUPERFAMILY Retrovirus zinc finger-like domains 360 406 IPR036875 GO:0003676|GO:0008270
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 559 575 - -
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 630 683 - -
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 659 683 - -
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 11 25 - -
Gabi2901g00025 801 ProSiteProfiles Zinc finger CCHC-type profile. 390 404 IPR001878 GO:0003676|GO:0008270
Gabi2901g00025 801 Pfam Splicing factor 1 helix-hairpin domain 131 238 IPR032570 -
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 287 308 - -
Gabi2901g00025 801 PANTHER RNA-BINDING PROTEIN RELATED 91 600 IPR045071 -
Gabi2901g00025 801 SMART rrm1_1 480 553 IPR000504 GO:0003723
Gabi2901g00025 801 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 242 368 IPR036612 GO:0003723
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 178 197 - -
Gabi2901g00025 801 CDD KH-I_BBP 241 334 - -
Gabi2901g00025 801 SMART kh_6 242 334 IPR004087 GO:0003676
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 644 658 - -
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 26 89 - -
Gabi2901g00025 801 Pfam KH domain 257 330 IPR004088 GO:0003723
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 753 786 - -
Gabi2901g00025 801 Gene3D K Homology domain, type 1 234 362 IPR036612 GO:0003723
Gabi2901g00025 801 ProSiteProfiles Type-1 KH domain profile. 257 329 - -
Gabi2901g00025 801 FunFam splicing factor-like protein 1 459 561 - -
Gabi2901g00025 801 Gene3D - 455 561 IPR012677 -
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 745 792 - -
Gabi2901g00025 801 Gene3D - 156 233 IPR047086 -
Gabi2901g00025 801 SMART c2hcfinal6 363 379 IPR001878 GO:0003676|GO:0008270
Gabi2901g00025 801 SMART c2hcfinal6 389 405 IPR001878 GO:0003676|GO:0008270
Gabi2901g00025 801 SUPERFAMILY RNA-binding domain, RBD 475 569 IPR035979 GO:0003676
Gabi2901g00025 801 MobiDBLite consensus disorder prediction 127 141 - -
Gabi2901g00025 801 Gene3D - 363 415 - -
Gabi2901g00025 801 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 481 550 IPR000504 GO:0003723
Gabi2901g00025 801 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 479 557 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2901g00025 Gabi-Chr2901 275360 280213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2901g00025 479 685 Eukaryotic Initiation Factors Gene Family AT3G16380 25.926 2.30e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2901g00025 K13095 - gmx:100800982 1202.96