Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2901g00020 ATGCCAGCGAACCGTGGCCAAGGCCAGCCCACAAGGTGGTACCAGCTATGCTTTGTTCCCACTAATGCAGATAGTTCAGATGATTCAGACACAGAATCTGTAGTCCTAGCTCCTAATACTCCAACTCCAACTAGTACATGGCAAGTTTCTCCATCAGAAACACCATCACCACCACGACCTCCAAACCCAGAACCTCAAATTGACTGGCATTTTCCACCTCCACCGCCACCGCCACCGCCACTTTATCTGGATACCACAGATGAAGCATTTGGCAGTGAATCACAGGATGATATATATGAAACTCCTCGTCCCGGTTATGCATTTTTGGATCATAATAATACTCCAACTCCTACTAGTACATGGCAAGTTTATCCATCAGAAACACCATCACCACCACGACCTCCAAACCCAGAACCTCAAATTGACTGGCATTTTCCACCTCCACCGCCACCGCCACCGCCACTTTATCTGGATACCACAGATGAAGCATTTGGCAGTGAATCACAGGATGATATATATGAAACTCCTCGTCCCGGTGATGCATTTTTGGATCATAATAATACTCCAACTCCTACTAGTACATGGCAAGTTTATCCATCAGAAACACCATCACCACCACGACCTCCAAACCCAGAACCTCAAATTGACTGGCATTTTCCACCTCCACCGCCACCGCCACTTTATCTGGATACCACAGATGAAGCATTTGGCAGTGAATCACAGGATGATATATATGAAACTCCTCGTCCCGGTTATGCATTTTTGGATCATAATAATACTCAAACTCCTACTAGTACATGGCAAGTTTATCCATCAGAAACACCACTTTATCTGGATGCCACAGATGAAGCATTTGGCAGTGAATCACAGGATGATATATATGAAACTCCTCGTCCCAGTGATGCATTTTTGGATCATAATCCACAGGGTCCCTCTTCTCTGATTGAGCAAGGATGGCCTGAAACTGATAAAAGAAACTACCCTCAGGTTCCAGATGGTATCATCAATTCCATTCTCAGGGTGAGGATCTCAGAGTATGATAGAGATAAACTGTCTCTTTGTCCCATTTGCATGGAAGAGCTTAAAGTGGGTTACCAAGCATGCAAGTTGCCCTGCAACCATACCTACTGTTCTGATTGCATTCTTCTTTGGCTCAACAACAACAAAACCTGTCCTCTTTGTAGGGTTCGATTGGATGGTGGGGAAGGTCAAGGTGGTTCTTATAGCAGAGGTAACAATAGTTTGGAGCCTTAA 1254 0.449 MPANRGQGQPTRWYQLCFVPTNADSSDDSDTESVVLAPNTPTPTSTWQVSPSETPSPPRPPNPEPQIDWHFPPPPPPPPPLYLDTTDEAFGSESQDDIYETPRPGYAFLDHNNTPTPTSTWQVYPSETPSPPRPPNPEPQIDWHFPPPPPPPPPLYLDTTDEAFGSESQDDIYETPRPGDAFLDHNNTPTPTSTWQVYPSETPSPPRPPNPEPQIDWHFPPPPPPPLYLDTTDEAFGSESQDDIYETPRPGYAFLDHNNTQTPTSTWQVYPSETPLYLDATDEAFGSESQDDIYETPRPSDAFLDHNPQGPSSLIEQGWPETDKRNYPQVPDGIINSILRVRISEYDRDKLSLCPICMEELKVGYQACKLPCNHTYCSDCILLWLNNNKTCPLCRVRLDGGEGQGGSYSRGNNSLEP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2901g00020 417 MobiDBLite consensus disorder prediction 201 229 - -
Gabi2901g00020 417 Pfam Ring finger domain 354 395 IPR001841 -
Gabi2901g00020 417 CDD RING-H2_PA-TM-RING 354 395 - -
Gabi2901g00020 417 MobiDBLite consensus disorder prediction 111 126 - -
Gabi2901g00020 417 ProSitePatterns Zinc finger RING-type signature. 372 381 IPR017907 -
Gabi2901g00020 417 MobiDBLite consensus disorder prediction 127 157 - -
Gabi2901g00020 417 MobiDBLite consensus disorder prediction 19 245 - -
Gabi2901g00020 417 SUPERFAMILY RING/U-box 334 398 - -
Gabi2901g00020 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 277 396 - -
Gabi2901g00020 417 MobiDBLite consensus disorder prediction 53 83 - -
Gabi2901g00020 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 400 IPR013083 -
Gabi2901g00020 417 ProSiteProfiles Zinc finger RING-type profile. 354 395 IPR001841 -
Gabi2901g00020 417 MobiDBLite consensus disorder prediction 19 52 - -
Gabi2901g00020 417 SMART ring_2 354 394 IPR001841 -
Gabi2901g00020 417 MobiDBLite consensus disorder prediction 306 327 - -
Gabi2901g00020 417 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2901g00020 Gabi-Chr2901 250265 251518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2901g00020 335 413 C3H Transcription Factor Family AT1G68180 39.286 2.00e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2901g00020 K11982 - cam:101501744 157.147