Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2901g00003 ATGTCATCACAAACCACAGTCACGGAGGCGCCGGATACCCACGCGCCGCTCCTCCGTCCCCGTCATGAAACTGTCTCCCGGGCCCCTACCCTCGCTCTCCTCCTTGGCCGCGCCGCCGGCCGCCGCGGACCGTCTATGCTGGTGCGTGAGACTGCGGCGCGTGAGCTGGAGGAGCGCCGCGCCGACTGGGGCTACTCGAAGCCGGTGGTGGCGCTTGACATGACGTGGAATATGGCCTTCGCGGTGGTCTCGGCGGTGATGCTGGCCTGCACCGTGGACGAGAAGCCGAACACGCCGATTCGGGTTTGGATAATCGGGTACTCGTTGCAGTGCCTGGTGCACGTGCTGCTTGTGTGGCTCCAGTATCGGCGCCGGAGCCAACGAGATGCGCGACGGCGGCGAAGAGCGCAGGACGTGGAGAGTGATGCCGGTGAGTTTGAGGACGGCAACGACAGCGACGACAACGATGGGAGCTCTGTGAACTCGTTTCGCTCTGGATTCATGAAACGATGTGAATCATTAAATACCGGGGTGTCGTTCCTTTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATGTACTTCTGCAAGATGCTCCACGTTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGTATACTTCCGAAATACCGATTTAGAATATTAAGCAATGAAGAAAAGCCTAGTGGTAGAGCTGGAACAATGGTTCCCATAGAAACCAGCAGTGGTTACTTGGCAAATGAACGAATACTTTTACCTGAGGATGCGGAATGCTGTATATGCCTCTGTTCATACGAGGATGGAACCGAGATCCATGCTCTTCCTTGCAGCCATCATTTTCATTCTTCATGCATAGTGAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAATGAACAGGTTTGA 1071 0.5313 MSSQTTVTEAPDTHAPLLRPRHETVSRAPTLALLLGRAAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMTWNMAFAVVSAVMLACTVDEKPNTPIRVWIIGYSLQCLVHVLLVWLQYRRRSQRDARRRRRAQDVESDAGEFEDGNDSDDNDGSSVNSFRSGFMKRCESLNTGVSFLWWIVGFYWVVSGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRILSNEEKPSGRAGTMVPIETSSGYLANERILLPEDAECCICLCSYEDGTEIHALPCSHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2901g00003 356 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2901g00003 356 Pfam Ring finger domain 304 346 IPR001841 -
Gabi2901g00003 356 SUPERFAMILY RING/U-box 293 350 - -
Gabi2901g00003 356 PANTHER TARGET OF ERK KINASE MPK-1 38 354 - -
Gabi2901g00003 356 FunFam E3 ubiquitin protein ligase RIE1 285 353 - -
Gabi2901g00003 356 SMART ring_2 305 345 IPR001841 -
Gabi2901g00003 356 ProSiteProfiles Zinc finger RING-type profile. 305 346 IPR001841 -
Gabi2901g00003 356 CDD RING-H2_PA-TM-RING 304 346 - -
Gabi2901g00003 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 354 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2901g00003 Gabi-Chr2901 73984 80529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2901g00003 12 355 C3H Transcription Factor Family AT1G68070 66.860 4.14e-175 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2901g00003 - - aip:107643865 547.74