Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2901g00002 ATGTCATCACAAACCACAGTCACGGAGGCGCCGGATACCCACGCGCCGCTCCTCCGTCCCCGTCATGAAACTGTCTCCCGGGCCCCTACCCTCGCTCTCCTCCTTGGCCGCGCCGCCGGCCGCCGCGGACCGTCTATGCTGGTGCGTGAGACTGCGGCGCGTGAGCTGGAGGAGCGCCGCGCCGACTGGGGCTACTCGAAGCCGGTGGTGGCGCTTGACATGACGTGGAATATGGCCTTCGCGGTGGTCTCGGCGGTGATGCTGGCCTGCACCGTGGACGAGAAGCCGAACACGCCGATTCGGGTTTGGATAATCGGGTACTCGTTGCAGTGCCTGGTGCACGTGCTGCTTGTGTGGCTCCAGTATCGGCGCCGGAGCCAACGAGATGCGCGACGGCGGCGAAGAGCGCAGGACGTGGAGAGTGATGCCGGTGAGTTTGAGGACGGCAACGACAGCGACGACAACGATGGGAGCTCTGTGAACTCATTCATGAAACGATGTGAATCATTAAATACCGGGGTGTCGTTCCTTTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATGTACTTCTGCAAGATGCTCCACGTTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGTATACTTCCGAAATACCGATTTAGAATATTAAGCAATGAAGAAAAGCCTAGTGGTAGAGCTGGAACAATGGTTCCCATAGAAACCAGCAGTGGTTACTTGGCAAATGAACGAATACTTTTACCTGAGGATGCGGAATGCTGTATATGCCTCTGTTCATACGAGGATGGAACCGAGATCCATGCTCTTCCTTGCAGCCATCATTTTCATTCTTCATGCATAGTGAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAATGAACAGGTTTGA 1059 0.5307 MSSQTTVTEAPDTHAPLLRPRHETVSRAPTLALLLGRAAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMTWNMAFAVVSAVMLACTVDEKPNTPIRVWIIGYSLQCLVHVLLVWLQYRRRSQRDARRRRRAQDVESDAGEFEDGNDSDDNDGSSVNSFMKRCESLNTGVSFLWWIVGFYWVVSGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRILSNEEKPSGRAGTMVPIETSSGYLANERILLPEDAECCICLCSYEDGTEIHALPCSHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2901g00002 352 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2901g00002 352 SUPERFAMILY RING/U-box 289 346 - -
Gabi2901g00002 352 FunFam E3 ubiquitin protein ligase RIE1 281 349 - -
Gabi2901g00002 352 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Gabi2901g00002 352 SMART ring_2 301 341 IPR001841 -
Gabi2901g00002 352 PANTHER TARGET OF ERK KINASE MPK-1 38 350 - -
Gabi2901g00002 352 CDD RING-H2_PA-TM-RING 300 342 - -
Gabi2901g00002 352 Pfam Ring finger domain 300 342 IPR001841 -
Gabi2901g00002 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 350 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2901g00002 Gabi-Chr2901 73984 80532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2901g00002 12 351 C3H Transcription Factor Family AT1G68070 67.941 1.29e-175 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2901g00002 - K13148 aip:107643865 539.65