Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2892g00004 ATGGGCATTCTTTCTTTCGTTAGTGTCCTTGTTTATATCCTTGTTCCTTCACTCACAGTTTCCCTTTCAGTTGATTCCATTGCACTGTCACATTCCCTCACTGATGGCATGACCTTAGTTTCACAAGGTGGAACCTTCGAACTTGGTTTCTTCAGCCCTGGGAAATCCAAGAAACATTACCTGGGAATTTGGTACAAAAACATCCCAGTTAAAACAGTTGTTTGGGTTGCTAACAGGGTCAACCCAATCAATGATTCCTCTGGTATCTTAACAGTGAATAGGGCTGGCCATCTTGTCCTTCACCAGAATGACACTGTTATTTGGAACACAACTTCTCCAAGAATACCACAGAATCCAATGGCTGAGCTCTTGGATTATGGCAATCTTGTGGTAAGAGATGAGAATGATGCAAACCCAGAAGCCTATTTGTGGCAAAGCTTTGACTATCCATGCGATACACTGTTGCCAGGGATGAAATTTGGATGGGACTTAAGAACAGGTTTCAATTGGACTCTAACAGCTTGGAAGAGTCCAGATGATCCAGCTCCAGGAGACTTTTCTTGTGCTGTACACAACAACAGTTATCCTGATTCATATTTGATGAAGGGAACCAAAAAGTACGGCAGATTTGGACCATGGAATGGCTTGCATTTAAGTGGTACTCCATTATTAAAGTCGAACCCAATTTATAATTTCAAGTTTGTTTACAATAAGGATGAGATATATTACACATACTACCTCGGAAATAAGTCTAGATATTCAAGAGTTGTAATCAACCAAACTGATTATACTCGTTCCCGTTATGTGTGGGTGGAAAGTGATCAAAATTGGATAGTTTATAGAGCAATGCCAGTAGACTACTGCGACCATTATGGCCTGTGTGGAGCCAATGGCAACTGTGTCATCAATGAATCACCAATTTGCCAATGTCTTAAAGGGTTCAAACCTAAGTCACTACAAGCATGGAACACAATGGACTGGTCTCAAGGATGTGTTCGCAACAAACCATTAAGATGCAATGATAAGCACAAGGATGGGTTCGTCAAATTGAAGGGGTTGAAAGTGCCAGATACTACACATTCTTGGTTGGATGAGGCAATGGATTTAGAGGAATGCAGAGCCAAGTGCTTGGATAACTGTTCTTGTATGGCCTATACTAATTCAGATATTAGAGGACAAGGGAGTGGCTGTGCCATGTGGTTTGGCAATCTAATTGATATAAGACAGTTTGCAGATGGGGATCAGGACTTATATGTTCGAATGGATGCTTCAGAATTAGGGTTTTCTTCTGAGGATGATCTAGATCTCCCGTTGCTTGACCTGTCAACAATAGCTAGTGCCACCAATAACTTCTCAGTGAATAACAAAATTGGAGAAGGTGGATTTGGACCTGTCTACAAGGGAAGATTAGCAAGTGGGAAAGAAATTGCTGTGAAGAGACTTTCAAGAAGCTCAACACAAGGAATGATCGAGTTCAAGAATGAAGTAAAACTGATTGCAAAACTTCAGCACCGAAATCTTGTAAAACTTCTTGGGTATTGCATTCATGGACAAGAAAAAATACTGATTTATGAATACATGCCAAACAGCAGCTTGGACACCTTCATTTTTGATCATATCAAAGGGAAGTTGCTAGATTGGTCTAAGCGCTTTCACATTATTTGTGGAATTGCACGGGGCCTTATGTATCTTCATCAAGATTCTAGATTGATGATTATTCATAGAGATCTCAAAGCAAGTAACGTTTTACTTGATGATAAGATGAACCCAAAAATATCAGATTTTGGCATGGCTAAAACTTCTGCAACTGAGCAAAATGAAGGAAATACAAACAGAATTGTGGGGACCTATGGCTACATGGCACCAGAATATGCTGCTTATGGACGATTTTCAGTGAAATCTGATGTCTTCAGTTTTGGTATTTTGGGGCTGGAGATTGTGTATGGAAAAAGAAATAGAGATTTTTATGATGCAAACCGAATTCATAACCTTATTGGTCAGGCCTGGATGTTGTGGATGGAAGGCAAGGCTTTAGAAATGATTGACAAAAACATGGAAGAATCATGGATTGAATCAGAAGTATTGCGTTGCATCCATATTAGTCTTTTGTGTGCCCAACAACATCCAGAGGATAGACCAACCATGTCATATGTGGTGCTTATGCTGGGAAGTGAGATAGAACTTCCTAAGCCTAAAGAACCTGGCTTCTTCGCTGGCAAGGCTTCATTTCAAACAAATTGCACCTCAAATCCAATGAAATCTTGCTCAAACGTTGAAGTTACCATAACCTCATTACAACCCAGGTGA 2307 0.4018 MGILSFVSVLVYILVPSLTVSLSVDSIALSHSLTDGMTLVSQGGTFELGFFSPGKSKKHYLGIWYKNIPVKTVVWVANRVNPINDSSGILTVNRAGHLVLHQNDTVIWNTTSPRIPQNPMAELLDYGNLVVRDENDANPEAYLWQSFDYPCDTLLPGMKFGWDLRTGFNWTLTAWKSPDDPAPGDFSCAVHNNSYPDSYLMKGTKKYGRFGPWNGLHLSGTPLLKSNPIYNFKFVYNKDEIYYTYYLGNKSRYSRVVINQTDYTRSRYVWVESDQNWIVYRAMPVDYCDHYGLCGANGNCVINESPICQCLKGFKPKSLQAWNTMDWSQGCVRNKPLRCNDKHKDGFVKLKGLKVPDTTHSWLDEAMDLEECRAKCLDNCSCMAYTNSDIRGQGSGCAMWFGNLIDIRQFADGDQDLYVRMDASELGFSSEDDLDLPLLDLSTIASATNNFSVNNKIGEGGFGPVYKGRLASGKEIAVKRLSRSSTQGMIEFKNEVKLIAKLQHRNLVKLLGYCIHGQEKILIYEYMPNSSLDTFIFDHIKGKLLDWSKRFHIICGIARGLMYLHQDSRLMIIHRDLKASNVLLDDKMNPKISDFGMAKTSATEQNEGNTNRIVGTYGYMAPEYAAYGRFSVKSDVFSFGILGLEIVYGKRNRDFYDANRIHNLIGQAWMLWMEGKALEMIDKNMEESWIESEVLRCIHISLLCAQQHPEDRPTMSYVVLMLGSEIELPKPKEPGFFAGKASFQTNCTSNPMKSCSNVEVTITSLQPR 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2892g00004 768 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 713 - -
Gabi2892g00004 768 ProSiteProfiles Protein kinase domain profile. 451 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2892g00004 768 Gene3D Hepatocyte Growth Factor 339 420 - -
Gabi2892g00004 768 Gene3D - 20 147 IPR036426 -
Gabi2892g00004 768 CDD PAN_AP_plant 336 420 - -
Gabi2892g00004 768 Pfam D-mannose binding lectin 72 176 IPR001480 -
Gabi2892g00004 768 PIRSF SRK 1 435 IPR024171 GO:0004674
Gabi2892g00004 768 PIRSF SRK 424 768 IPR024171 GO:0004674
Gabi2892g00004 768 SUPERFAMILY Protein kinase-like (PK-like) 435 722 IPR011009 -
Gabi2892g00004 768 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Gabi2892g00004 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Gabi2892g00004 768 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Gabi2892g00004 768 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Gabi2892g00004 768 CDD B_lectin 30 150 IPR001480 -
Gabi2892g00004 768 SMART blect_4 30 150 IPR001480 -
Gabi2892g00004 768 Pfam Domain of unknown function (DUF3403) 726 768 IPR021820 GO:0004674
Gabi2892g00004 768 Pfam PAN-like domain 339 407 IPR003609 -
Gabi2892g00004 768 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Gabi2892g00004 768 Pfam Protein tyrosine and serine/threonine kinase 453 719 IPR001245 GO:0004672|GO:0006468
Gabi2892g00004 768 CDD STKc_IRAK 457 722 - -
Gabi2892g00004 768 Gene3D Phosphorylase Kinase; domain 1 421 526 - -
Gabi2892g00004 768 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 527 730 - -
Gabi2892g00004 768 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 418 526 - -
Gabi2892g00004 768 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Gabi2892g00004 768 Gene3D Transferase(Phosphotransferase) domain 1 527 730 - -
Gabi2892g00004 768 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 421 - -
Gabi2892g00004 768 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Gabi2892g00004 768 SMART serkin_6 451 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2892g00004 768 SMART ntp_6 342 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2892g00004 Gabi-Chr2892 30556 34133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2892g00004 439 736 Receptor kinase-like Gene Family AT4G23230 59.866 2.00e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2892g00004 PK_Tyr_Ser-Thr 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2892g00004 - - qsu:111985779 1014.99