Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2889g00002 ATGGAAGAAACAAGCAGCATGCAAGAATGTGTCATCACCCCAACAACCTATCGAGGGGTTCGCAAGAGAAAATGGGGGAAATGGGTGTCAGAAATTAGGGAACCTGGTAAGAAAAAAAGAATATGGTTAGGGAGTTACGAGGAACCAGAAATGGCAGCAGCAGCATATGATGTAGCATCCTTGCACTTCAAAGGACACGCTGCAAAGCTTAACTTTCCTGAATTGGCTGAGACTCTGCCACGACCCGCAAGTTCTAGAGCCGAGGATGTTCAACTTGCAGCTCAACAAGCAGCATTCAAGTTCAAAAGACCAATAACATCATCATCTGAGGGAAGTGGCACTAATAACAATAAGGATAACGTGGTTCCTGCGAGGGTGGGGTTGTCACCGAGTCAAATTCAAGCCATCAATGAGTCTCCATTGGATTCACCAAAGATGTGGATGCAAATGGCAGAGGCACTCAAGTTTGGGTTTGATGAGTCATCTATGATGCATTATCGTGATGATGTTTTAGAGTTGAGTGGATGGGAAGATATACAGGATGAGTCCATATGGGACTATTAA 564 0.445 MEETSSMQECVITPTTYRGVRKRKWGKWVSEIREPGKKKRIWLGSYEEPEMAAAAYDVASLHFKGHAAKLNFPELAETLPRPASSRAEDVQLAAQQAAFKFKRPITSSSEGSGTNNNKDNVVPARVGLSPSQIQAINESPLDSPKMWMQMAEALKFGFDESSMMHYRDDVLELSGWEDIQDESIWDY 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2889g00002 187 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Gabi2889g00002 187 MobiDBLite consensus disorder prediction 103 123 - -
Gabi2889g00002 187 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Gabi2889g00002 187 MobiDBLite consensus disorder prediction 103 122 - -
Gabi2889g00002 187 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Gabi2889g00002 187 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Gabi2889g00002 187 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Gabi2889g00002 187 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Gabi2889g00002 187 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Gabi2889g00002 187 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Gabi2889g00002 187 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Gabi2889g00002 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2889g00002 Gabi-Chr2889 12738 13301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2889g00002 14 186 AP2-EREBP Transcription Factor Family AT1G71450 49.438 2.33e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2889g00002 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2889g00002 - - gmx:100788567 247.284