Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2889g00001 ATGGAAGAAACAAGCAGCATGCAAGAATGTGTCATCACCCCAACAACCTATCGAGGGGTTCGCAAGAGGAAATGGGGGAAATGGGTGTCAGAAATTAGGGAACCTGGTAAGAAAAAAAGAATATGGTTAGGGAGTTATGAGGAACCAGAAATGGCAGCAGCAGCATATGATGTAGCATCCTTGCACTTCAGAGGACACGCTGCAAAGCTTAACTTTCCTGAATTGGCTGAGACTCTGCCACGACCAGCAAGTTCTAGAGCCGAGGATGTTCAACTTGCAGCTCAACAAGCAGCATTGAAGTTCAAAAGACCAATAACATCATCATCATCATGTGAGGGAAGTGGCAATAATAACAATGAGGATAACGTGGTTCCTGCGAGGGTGGGGTTGTCACCGAGTCAAATTCAAGCCATCAATGAGTTCCCATTGGATTCACCAAAGATGTGGATGCACATGGCAGAGGCACCCAATTTTGGGTTTGATGAGTCATCTATGATGCTTTATTGTGATGATGTTTTAGAGTTGAGTGGATGGGAAGATATACAGCATGAGTCCTTATGGGACTATTGA 570 0.4456 MEETSSMQECVITPTTYRGVRKRKWGKWVSEIREPGKKKRIWLGSYEEPEMAAAAYDVASLHFRGHAAKLNFPELAETLPRPASSRAEDVQLAAQQAALKFKRPITSSSSCEGSGNNNNEDNVVPARVGLSPSQIQAINEFPLDSPKMWMHMAEAPNFGFDESSMMLYCDDVLELSGWEDIQHESLWDY 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2889g00001 189 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Gabi2889g00001 189 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Gabi2889g00001 189 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Gabi2889g00001 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 133 - -
Gabi2889g00001 189 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Gabi2889g00001 189 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Gabi2889g00001 189 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Gabi2889g00001 189 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Gabi2889g00001 189 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Gabi2889g00001 189 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2889g00001 Gabi-Chr2889 1624 2435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2889g00001 14 188 AP2-EREBP Transcription Factor Family AT1G71450 52.571 1.96e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2889g00001 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2889g00001 - - pvu:PHAVU_002G036000g 246.128