Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2888g00045 ATGTTGTCCCCAAAACCTTCGTTAGCGTCGGAATTGGAAGAAAGGATGGGGGATTTCAAGCCGTTTTCTGAAGGGTCGTCGTGTTCGCGTTCGATAAGCGAGACGGTAAATGGGTCGCACAAGTTCACGATAAAGGGTTATTCTTTGGCGAAAGGGATGGGTGCTGGGAAGTATATAATGAGCGACACCTTCAGCGTTGGTGGTTATGATTGGGCCATTTATTTTTACCCTGATGGTAAGAACCCTGAGGACAATTCCATGTATGTTTCTGTCTTCATAGCACTTGCAAGTGACGGAACCGATGTTAGGGCTCTCTTCAAGTTGACGTTGATTGATCAGAGTGATAAGGGCAATGATAAAGTCCATAGCCATTTCGATCGCCCCCTTGAGAGTGGACCTTATACCTTGAAGTACAGAGGCAGCATGTGGGGTTACAAGCGTTTTTTCAGAAGAACACTATTGGAAACTTCGGAGTATCTGAAAGATGATTGCCTTGTCATGCATTGCACTGTTGGTGTTGTCAAAACTCGTTTTGAGGGATCCAAACAGGGTGTTATCATGACGCAGTCAGACATGGGCCAAGATTTTAAAGACTTGTTGGAATCTGAAGTTGGTTGTGACATAGTTTTCAAGGTCAAGAGTGAAAGCTTCAAAGCTCATAAGTTGATTCTTGCCGCCCGATCTCCAGTGTTTAGAGCGCAGTTTTTTGGGCTTGTTGGGGATCCTTGCTTAGAGGAAGTAGTGGTAGAGGATATTGAGCCCTTTATCTTCAAGGCAATGCTTCTTTTCATTTATTCAGACAGACTTCCTGGCATGTATGAGGTTATGGGCTCAATACCCGTGTGCTCATATACTGTCATGGTGCAGCATCTCTTGGCTGCTGCTGATCTCTATAATCTTGACCGGCTAAAACTGTTGTGTGAATCAAAATTATGTGAAGAAATCAATACTGACACCGTGGCGACAACACTTGCCCTGGCTGAGCAACACCACTGTCCACAGCTTAAGGCGGTCTGTTTAAAATTTATTGCTAATCCAACAATCTTGGGAGCTGTAATGCAGTCCGAAGCTTTTGTGCATTTGAAAGAGAGCTGCCCCTCAATGTTGTTGGAATTGCTGGAGACATTTGCATCAGTTGATGATAACCCAAGCCAGCCTTTGAGCAGGAAGAGAAGTGGAAGTAGCATATATGGTCAAGATTTGGCAGATGGGGCAGCTGCTGAATCAGTTAATCCAAATGGCAGGCGTATCAGGAGGCGAACATAA 1266 0.4479 MLSPKPSLASELEERMGDFKPFSEGSSCSRSISETVNGSHKFTIKGYSLAKGMGAGKYIMSDTFSVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLIDQSDKGNDKVHSHFDRPLESGPYTLKYRGSMWGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVKTRFEGSKQGVIMTQSDMGQDFKDLLESEVGCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPCLEEVVVEDIEPFIFKAMLLFIYSDRLPGMYEVMGSIPVCSYTVMVQHLLAAADLYNLDRLKLLCESKLCEEINTDTVATTLALAEQHHCPQLKAVCLKFIANPTILGAVMQSEAFVHLKESCPSMLLELLETFASVDDNPSQPLSRKRSGSSIYGQDLADGAAAESVNPNGRRIRRRT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2888g00045 421 SMART BTB_4 206 315 IPR000210 GO:0005515
Gabi2888g00045 421 FunFam BTB-POZ and math domain 1 182 309 - -
Gabi2888g00045 421 SUPERFAMILY TRAF domain-like 34 173 - -
Gabi2888g00045 421 Gene3D Potassium Channel Kv1.1; Chain A 185 315 IPR011333 -
Gabi2888g00045 421 CDD BTB_POZ_BPM_plant 192 312 - -
Gabi2888g00045 421 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 31 371 IPR045005 GO:0016567
Gabi2888g00045 421 CDD BACK_AtBPM-like 312 375 IPR034090 -
Gabi2888g00045 421 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Gabi2888g00045 421 CDD MATH 38 171 IPR002083 GO:0005515
Gabi2888g00045 421 Gene3D - 316 395 - -
Gabi2888g00045 421 Pfam BTB/POZ domain 196 313 IPR000210 GO:0005515
Gabi2888g00045 421 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 176 IPR008974 GO:0005515
Gabi2888g00045 421 SMART math_3 42 154 IPR002083 GO:0005515
Gabi2888g00045 421 ProSiteProfiles BTB domain profile. 206 269 IPR000210 GO:0005515
Gabi2888g00045 421 SUPERFAMILY POZ domain 189 313 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2888g00045 Gabi-Chr2888 394745 406719 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi2888g00045 BTB 2.7e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2888g00045 K10523 - gmx:100786636 766.533