Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2888g00039 ATGGCTGGGATTTGCTGTGGTGTTGTTGGAGAAGGTGAAACTCCGGCTCCAATTGAGCCAAGTTCACGGCCTTCCCGGCGCCGGAGTTTGGACCTTCTTCCGTTGAAATATATGGCCGACATGGCAGTGCCATCGTCGGACACTTCCCGGAAACGCCACAGACTGGATCTCTGTCCTAAGGATTGTGAAGAATCCAGTGCCGTAGACGAGGAGGATCCGAAACGTTCGAAGGTTTCTTCTTCTTCCTCCTCAACGGTGGGGGATTTGGAAGTTGAAGAGTGTCCCAAGTTTGGTGTTACTTCGGTTTGTGGTAGAAGAAGGGATATGGAAGATTCGGTTTCTGTTCACCCTTCGTTTTCTCAAGAAAAGTTTAACTACTTCGGTGTTTTCGACGGTCACGGTTGCTCACATGTTGCGACTATGTGTAAGGAGAGGCTACACGAGATTGTGAAGGAAGAGATTCACGTGGCGCGTGAGAATTTGGAGTGGAAATCGACGATGGAGCATGCTTTTGCTCGAATGGATGATGAGGTTCAGAGCTGGAGTCAGAGTAACCAGACCTCACCTTGTAGGTGTGAGCTTCAGACTCCTCACTGCGACGCCGTCGGATCCACCGCCGTCGTCGCCGTCGTCACCCAGGACAAGCTCGTCGTCTCCAACTGCGGCGACTCACGCGCCGTCCTCTGTCGAAAAGGCGTCGCCATCCCACTCTCCTCCGATCACAAGCCCGACCGACCCGACGAATTGCTCCGGGTTCAAGCCGCTGGAGGGCGCGTGATATATTGGGATGGGCCCAGAGTGCTTGGGGTGCTTGCTATGTCAAGAGCCATAGGTGACAATTATCTGAAGCCGTATGTGATTTCGGAACCGGAGGTGACGGTAACTGAGCGTAGCGACGAGGATGAGTGTTTGATTTTGGCGAGTGATGGACTATGGGACGTGGTGTCAAACGACACCGCATGTGGGGTGGTGAGGATGTGCCTCAAGGCCCAGAAGCTGCCGTCGCCGCCGCCTGGGTCTCCCGGGAGTGATGTGGCGGCGGATGGTTCGGACAGGGCTTGCTCCGATGCGTCAATTCTGTTGACCAAGTTGGCGTTGGCTAGGCATAGTTCGGATAATGTGAGCGTGGTGGTGGTTGATTTAAGGAGAGATCAACAACAACAACAATCATCCAATTCCAACGATTGTTAA 1191 0.5357 MAGICCGVVGEGETPAPIEPSSRPSRRRSLDLLPLKYMADMAVPSSDTSRKRHRLDLCPKDCEESSAVDEEDPKRSKVSSSSSSTVGDLEVEECPKFGVTSVCGRRRDMEDSVSVHPSFSQEKFNYFGVFDGHGCSHVATMCKERLHEIVKEEIHVARENLEWKSTMEHAFARMDDEVQSWSQSNQTSPCRCELQTPHCDAVGSTAVVAVVTQDKLVVSNCGDSRAVLCRKGVAIPLSSDHKPDRPDELLRVQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSDEDECLILASDGLWDVVSNDTACGVVRMCLKAQKLPSPPPGSPGSDVAADGSDRACSDASILLTKLALARHSSDNVSVVVVDLRRDQQQQQSSNSNDC 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2888g00039 396 Pfam Protein phosphatase 2C 97 373 IPR001932 -
Gabi2888g00039 396 MobiDBLite consensus disorder prediction 9 30 - -
Gabi2888g00039 396 MobiDBLite consensus disorder prediction 63 87 - -
Gabi2888g00039 396 SUPERFAMILY PP2C-like 95 382 IPR036457 -
Gabi2888g00039 396 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Gabi2888g00039 396 FunFam Protein phosphatase 2C 37 91 388 - -
Gabi2888g00039 396 PANTHER PROTEIN PHOSPHATASE 74 381 IPR015655 GO:0004722|GO:0006470
Gabi2888g00039 396 MobiDBLite consensus disorder prediction 63 77 - -
Gabi2888g00039 396 SMART PP2C_SIG_2 108 381 IPR001932 -
Gabi2888g00039 396 ProSiteProfiles PPM-type phosphatase domain profile. 96 381 IPR001932 -
Gabi2888g00039 396 SMART PP2C_4 84 379 IPR001932 -
Gabi2888g00039 396 CDD PP2Cc 96 333 IPR001932 -
Gabi2888g00039 396 Gene3D - 91 391 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2888g00039 Gabi-Chr2888 339943 341987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2888g00039 1 391 PP2C-type Phosphatase Gene Family AT3G11410 61.220 1.86e-149 427