Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2888g00023 ATGGAGGAATCTCAGTACTTGATGTGGATGAAGAGAAAACAAATCTTGAAGTCACATATTCAAGAACCATTTGGAGCCTGCAACAACAACAACTCATGGGAGGAAAGGGCTTTTGCAGAAGATGCGGCTAGGATACTTGGTGGTTGTAGATGGCCTCCAAGATCTTACACCTGTCATTTCTGTAAAAGAGAGTTCAAGTCTGCACAAGCTCTAGGGGGCCACATGAATGTGCACAGAAGGGACAGAGCTAAGCTCAAACAAAATCTTAGCCAAGGGAATGAAACCCTTCATCATCATCATCATCACAAAAATGATTGTAAGTCTTTATTTGCTCAATTTTCTTCAGAGAACTGCTCTCACCTAGATTGTTGTCTTAATCCTTACTCTAACCTTGCTGCTGGTACAGTTACAACAAGCAAACTCTCATCTTCTAGGCCATCAACTATGTCCACAAAAGAGAATTTCTATCAGCCTAACATGTCTCCTGATTCAGAACCAAAAGGGCTAATCAATGCAAGGGAAGAACTTTATAAAGGTTTGGGATGTAAAGATTATGTTGAAGCAAGTTTGTCTGTGGCACAAAATTTGGTTTTTTGCCAAAAGTTACCAACTGATTCACGTGGGGATGAAGCCATCAGATATAAAAGAACAAAGACTTCTATTTCTTCTCTGCCTCTCTTCCTCAAGCCATGTTCAAATGATAGACACCTAAATTTTCAGTCTGCAGAATTCGTACTTGGACTTAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAACCACAGAAAGTTTAG 804 0.4042 MEESQYLMWMKRKQILKSHIQEPFGACNNNNSWEERAFAEDAARILGGCRWPPRSYTCHFCKREFKSAQALGGHMNVHRRDRAKLKQNLSQGNETLHHHHHHKNDCKSLFAQFSSENCSHLDCCLNPYSNLAAGTVTTSKLSSSRPSTMSTKENFYQPNMSPDSEPKGLINAREELYKGLGCKDYVEASLSVAQNLVFCQKLPTDSRGDEAIRYKRTKTSISSLPLFLKPCSNDRHLNFQSAEFVLGLKPGMEDLDLELRLGKPQKV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2888g00023 267 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Gabi2888g00023 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Gabi2888g00023 267 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Gabi2888g00023 267 MobiDBLite consensus disorder prediction 140 166 - -
Gabi2888g00023 267 SMART c2h2final6 56 78 IPR013087 -
Gabi2888g00023 267 Pfam C2H2-type zinc finger 56 80 - -
Gabi2888g00023 267 MobiDBLite consensus disorder prediction 140 161 - -
Gabi2888g00023 267 PANTHER OS07G0101800 PROTEIN 28 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2888g00023 Gabi-Chr2888 253650 254453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2888g00023 28 91 C2H2 Transcription Factor Family AT2G37740 73.438 1.38e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2888g00023 - - gmx:102663477 349.747