Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2888g00017 ATGGCGAATCCTTGGTGGGTTGGGAATGTGGGAATGAGACACACGGAAGCTATGTCATCATCATCATCTCCATTACTTCATCTGAGAAGAGAACAAGAATTCATAGACAACAACAACACAATCGCTACACCAACTAATAGCAGCAACAGCAACACTAACAACGCAAACACCAACAACACAACAGAGGATGATGAGAGCCGAGACAACGACGGTGGTGGTGGTGGTGATCAGAACAACGCAGGTGGTGGTGGTGAGGCGGCGGAGCCAGGTAGCAGCCGCCGCAGGCCACGTGGCCGGCCACCGGGTTCCAAGAACAAGCCAAAACCACCCATTGTTATAACCAAGGAAAGCCCCAACGTGCTGCGAAGCCACGTGTTGGAAATCAGCAGCGGCAGTGACGTCACCGACAGCATCGCCGCCTTCGCTAACCGCCGCCACCGTGGGGTTTCGGTGCTGAGTGGGAGTGGCATTGTGACCAATGTAACCCTTCGGCAACCGACTGCTCCTGGTGGGGTTATCACTCTTCAGGGAAGGTTTGAGATATTGTCTCTCTCCGGTGCTTTTTTGCCTTCTCCTTCGCCACCAGGAGCCACCGGTCTTGCTGTTTATCTGGCCGGTGGTCAAGGGCAGGTTGTCGGTGGTGCCGTCGTGGGTTCATTGGTGGCTTCTGGACCTGTGATGGTGATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTGCCACTAGAGGATGAACAAGAAGCTGAGGAGGTAATGCAAGTGCAGCAACAACAATCAGCAACAAGTCCTGTTGAACGAGTTTTGGGTGAACAAGGTTCAATGCCAATGTATAATTTGCCTACAAATTTGTTACACAATGGTCAAATGCCTCATGATGTGTTCTGGGGACCTCCACCTCGTCCTCCTCCACCTTCTTTCTGA 924 0.5195 MANPWWVGNVGMRHTEAMSSSSSPLLHLRREQEFIDNNNTIATPTNSSNSNTNNANTNNTTEDDESRDNDGGGGGDQNNAGGGGEAAEPGSSRRRPRGRPPGSKNKPKPPIVITKESPNVLRSHVLEISSGSDVTDSIAAFANRRHRGVSVLSGSGIVTNVTLRQPTAPGGVITLQGRFEILSLSGAFLPSPSPPGATGLAVYLAGGQGQVVGGAVVGSLVASGPVMVIAATFANATYERLPLEDEQEAEEVMQVQQQQSATSPVERVLGEQGSMPMYNLPTNLLHNGQMPHDVFWGPPPRPPPPSF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2888g00017 307 CDD DUF296 122 197 IPR005175 -
Gabi2888g00017 307 MobiDBLite consensus disorder prediction 39 60 - -
Gabi2888g00017 307 PIRSF ESCAROLA 35 305 IPR014476 GO:0003680
Gabi2888g00017 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 119 249 - -
Gabi2888g00017 307 FunFam AT-hook motif nuclear-localized protein 121 248 - -
Gabi2888g00017 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 122 234 IPR005175 -
Gabi2888g00017 307 MobiDBLite consensus disorder prediction 39 116 - -
Gabi2888g00017 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 51 297 IPR014476 GO:0003680
Gabi2888g00017 307 Gene3D - 121 261 - -
Gabi2888g00017 307 ProSiteProfiles PPC domain profile profile. 118 256 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2888g00017 Gabi-Chr2888 227760 228683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2888g00017 1 304 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.215 2.29e-77 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2888g00017 - - qsu:112039774 305.449