Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2888g00016 ATGGCGAATCCTTGGTGGGTTGGGAATGTGGGAATGAGACACACGGAAGCTATGTCATCATCATCATCTCCATTACTTCATCTGAGAAGAGAACAAGAATTCATAGACAACAACAACACAATCGCTACACCAACTAATAGCAGCAACAGCAACACTAACAACGCAAACACCAACAACACAACAGAGGATGATGAGAGCCGAGACAACGACGGTGGTGGTGGTGGTAGCAGCCGCCGCAGGCCACGTGGCCGGCCACCGGGTTCCAAGAACAAGCCAAAACCACCCATTGTTATAACCAAGGAAAGCCCCAACGTGCTGCGAAGCCACGTGTTGGAAATCAGCAGCGGCAGTGACGTCACCGACAGCATCGCCGCCTTCGCTAACCGCCGCCACCGTGGGGTTTCGGTGCTGAGTGGGAGTGGCATTGTGACCAATGTAACCCTTCGGCAACCGACTGCTCCTGGTGGGGTTATCACTCTTCAGGGAAGGTTTGAGATATTGTCTCTCTCCGGTGCTTTTTTGCCTTCTCCTTCGCCACCAGGAGCCACCGGTCTTGCTGTTTATCTGGCCGGTGGTCAAGGGCAGGTTGTCGGTGGTGCCGTCGTGGGTTCATTGGTGGCTTCTGGACCTGTGATGGTGATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTGCCACTAGAGGATGAACAAGAAGCTGAGGAGGTAATGCAAGTGCAGCAACAACAATCAGCAACAAGTCCTGTTGAACGAGTTTTGGGTGAACAAGGTTCAATGCCAATGTATAATTTGCCTACAAATTTGTTACACAATGGTCAAATGCCTCATGATGTGTTCTGGGGACCTCCACCTCGTCCTCCTCCACCTTCTTTCTGA 879 0.5131 MANPWWVGNVGMRHTEAMSSSSSPLLHLRREQEFIDNNNTIATPTNSSNSNTNNANTNNTTEDDESRDNDGGGGGSSRRRPRGRPPGSKNKPKPPIVITKESPNVLRSHVLEISSGSDVTDSIAAFANRRHRGVSVLSGSGIVTNVTLRQPTAPGGVITLQGRFEILSLSGAFLPSPSPPGATGLAVYLAGGQGQVVGGAVVGSLVASGPVMVIAATFANATYERLPLEDEQEAEEVMQVQQQQSATSPVERVLGEQGSMPMYNLPTNLLHNGQMPHDVFWGPPPRPPPPSF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2888g00016 292 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 219 IPR005175 -
Gabi2888g00016 292 MobiDBLite consensus disorder prediction 39 60 - -
Gabi2888g00016 292 MobiDBLite consensus disorder prediction 61 77 - -
Gabi2888g00016 292 Gene3D - 106 246 - -
Gabi2888g00016 292 MobiDBLite consensus disorder prediction 39 101 - -
Gabi2888g00016 292 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 234 - -
Gabi2888g00016 292 ProSiteProfiles PPC domain profile profile. 103 241 IPR005175 -
Gabi2888g00016 292 FunFam AT-hook motif nuclear-localized protein 106 233 - -
Gabi2888g00016 292 PIRSF ESCAROLA 9 290 IPR014476 GO:0003680
Gabi2888g00016 292 CDD DUF296 107 182 IPR005175 -
Gabi2888g00016 292 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 282 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2888g00016 Gabi-Chr2888 227760 228683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2888g00016 1 289 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 57.372 9.72e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2888g00016 - - qsa:O6P43_020634 306.605