Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2888g00013 ATGGCAAAAACACTCGTGCTTCTTCTTCTCTTGGTTCTGATCCTTTTGGCCTCAAAACCTGCAAAATCTCAGCGTGACGAGCTCTTCTATGATGGTTTTGATGGTGCTGCCACCAACGTAACCTTAAACGGAGGTGCAGTGATTGAGCACAAGGGCATAATTCGCTTAACAAACGACACTCTCAGGGTAATTGGGCATGCGTTTCATTCAACCCCAATCAAGTTCAAGAACTCTTCCACAGACACCAAAGTTTTCTCCTTTTCCACTGCTTTTGCTTTTGCAATAAACCCCCAGTACCCAAAACTCGGTGGCCATGGCTTTGCCTTCACCATTTCTCGCTCCAAAGTGCTTCCAGGTGCGTATCCTAGCCAGTACATGGGACTCCTCAACCCAAACAACATAGGGAACATGTCAAACCACTTGTTCGCAGTGGAATTCGACACTGTTCAAGACTTCGAATTTGTTGACATCAATGACAACCACGTTGGTATCAACCTGAACAACATGGTATCCAACAAATCGGTTGAAGCCACTTTTTTCATTGACGGTTCAAAGAATAATAAGCAAGACCTCAATTTGAAGAGTGGCAAGGTGATTCAAGCATGGGTTGACTACGATTCCACTATGAATCAATTGGAAGTTAGACTCTCCCCAACTTCAACAAAACCCAGTTCCCCAATCTTGTCTTACCAAGTGGATCTCTCACCAATTCTCCAAGACTCTATGTATGTTGGGTTTTCTTCTTCAACAGGGTTGCTCAAGAGCTGGCACTATATCTTGGGTTGGAGCTTCAAGATCAATGGAGAGGCAAAAACCCTGTCTTTGGAAACACTCCCTTCACTCTCTTCACCCAACAACACTAAAAAGGCCTTAATTTTAGGACTCTCTCTTTCTGCTGCGATTGTAACACTTGCGGCAATTGGGTTAGCATTGTTTTATCTGATCAGAAAGATGAAAAATGCTGATGTGATTGAAGCTTGGGAATTAAATGTTGGTCCCCATAGATTTCCATATAAAGAACTAAAGCAAGCCACAAGAGGGTTCAAGGACAAAAACCTAATCGGGTTTGGTGGGTTTGGTCGAGTTTACAAAGGGGTTATCCCAAAAACCAACACCGAAATCGCAGTGAAACGAATCTCCCACGAATCAAAACAAGGGTGGCAAGAGTTTGTGTCGGAAATCGCAACCATAGGTAGGCTTCGACACAGGAACCTAGTACAGTTACTAGGTTGGTGTCGAAGGCGTAACGATCTACTATTAGTCTACGATTTCATGCAAAATGGTAGCTTGGACAAGCACCTATTCGATGAAGCAAGAGAAATATTGAGGTGGGAACAAAGGTTCAAGATCATAAAGGGTGTGGCTTTAGGGCTTGTGTATTTACACGAAGAATGGGAACAAACGGTGATTCACAGAGACGTTAAAGCTGGGAATGTTCTGTTAGATGCAGAGATGAATGGGAGGCTCGGTGATTTCGGTTTGGCGAAGCTATACGAGCATGGTTCGAACCCAACAACGACAAGGGTTGTTGGAACATTGGGTTATCTTGCACCTGAGTTAACGAAAACAGGGAAACCTACGACAAGTTCTGATGTGTTTGCGTTTGGTGCTGTGTTGCTTGAAGTGGTGTGTGGGAGGAGGCCCATTGAGCCCAAGGCGTTGCCGGAGGAGCTTGTTTTGGTGGATTGGGTGTGGGAACGGTGGCGCGTGGGGGCGGTGTTGGGGGTGGTGGACAACAAGTTGGGTGGGGTGTTTGATGAGGTGGAGGCGTTGTTGGTGCTCAAGTTGGGTTTGTTGTGTTCCAATGAGTCGCCGGAAAAGAGACCTAGTATGAGGCAGGTGGTGAGGTACTTGGACGGCGAGGTGGAGCTGCCGGCGGTGGAGGACGTGTTTGATGGGAAAAAGGTTGGTGGTGTAGCCACCGTTGTTGTTGGTGGTGTTGAGGATTTTGTGCATTCGTATCCAACGTCGTCGATTTTTGATAGGGCGAATACGTGGTCGTCAGCCGGTGATGACGTGGAGGGTGGCTCCGCTTCCTCTCTTTCACTTTCCGGTGGTCGGTAG 2064 0.4666 MAKTLVLLLLLVLILLASKPAKSQRDELFYDGFDGAATNVTLNGGAVIEHKGIIRLTNDTLRVIGHAFHSTPIKFKNSSTDTKVFSFSTAFAFAINPQYPKLGGHGFAFTISRSKVLPGAYPSQYMGLLNPNNIGNMSNHLFAVEFDTVQDFEFVDINDNHVGINLNNMVSNKSVEATFFIDGSKNNKQDLNLKSGKVIQAWVDYDSTMNQLEVRLSPTSTKPSSPILSYQVDLSPILQDSMYVGFSSSTGLLKSWHYILGWSFKINGEAKTLSLETLPSLSSPNNTKKALILGLSLSAAIVTLAAIGLALFYLIRKMKNADVIEAWELNVGPHRFPYKELKQATRGFKDKNLIGFGGFGRVYKGVIPKTNTEIAVKRISHESKQGWQEFVSEIATIGRLRHRNLVQLLGWCRRRNDLLLVYDFMQNGSLDKHLFDEAREILRWEQRFKIIKGVALGLVYLHEEWEQTVIHRDVKAGNVLLDAEMNGRLGDFGLAKLYEHGSNPTTTRVVGTLGYLAPELTKTGKPTTSSDVFAFGAVLLEVVCGRRPIEPKALPEELVLVDWVWERWRVGAVLGVVDNKLGGVFDEVEALLVLKLGLLCSNESPEKRPSMRQVVRYLDGEVELPAVEDVFDGKKVGGVATVVVGGVEDFVHSYPTSSIFDRANTWSSAGDDVEGGSASSLSLSGGR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2888g00013 687 CDD STKc_IRAK 354 620 - -
Gabi2888g00013 687 SMART serkin_6 348 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2888g00013 687 Gene3D Phosphorylase Kinase; domain 1 333 424 - -
Gabi2888g00013 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Gabi2888g00013 687 PANTHER - 14 625 - -
Gabi2888g00013 687 Pfam Legume lectin domain 29 277 IPR001220 GO:0030246
Gabi2888g00013 687 FunFam Lectin-domain containing receptor kinase A4.3 333 424 - -
Gabi2888g00013 687 ProSitePatterns Protein kinases ATP-binding region signature. 354 377 IPR017441 GO:0005524
Gabi2888g00013 687 FunFam L-type lectin-domain containing receptor kinase S.4 425 630 - -
Gabi2888g00013 687 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 281 IPR013320 -
Gabi2888g00013 687 ProSiteProfiles Protein kinase domain profile. 348 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2888g00013 687 SUPERFAMILY Protein kinase-like (PK-like) 330 621 IPR011009 -
Gabi2888g00013 687 CDD lectin_legume_LecRK_Arcelin_ConA 30 268 IPR001220 GO:0030246
Gabi2888g00013 687 Pfam Protein kinase domain 348 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2888g00013 687 Gene3D - 27 267 - -
Gabi2888g00013 687 FunFam L-type lectin-domain containing receptor kinase S.4 24 272 - -
Gabi2888g00013 687 Gene3D Transferase(Phosphotransferase) domain 1 425 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2888g00013 Gabi-Chr2888 199127 201190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2888g00013 32 653 Receptor kinase-like Gene Family AT3G55550 60.443 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi2888g00013 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2888g00013 - - qsa:O6P43_014345 949.503