Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2888g00008 ATGATGATGTCTTCTGGGACATCTTCGTATTGGTGCTACAGGTGCAGTCGTTCTGTGAGGGCATGGAGACAGGACACGGTGGTTTGTCCTGATTGTGATGATGGATTTCTTGAGGAGATAGAAAATCCGACACGCTCTGTCCACGTGGATGGCCGGAGGCGGCGGTTTCCGGCGGCGGCAATGTACATGATCGGCCAACGCACCGGTTTCGATCAGAATTCACGCCCTGCTCTCAGGCGAACCCGCCGCAACGGCGGTGACCGGTCTCCTTTCAATCCGGTTATCGTCCTCCGCGGCGGTGGATCGTCGGAAGGGGCGGAGGGAGGCGGCGGCGGAGGAGGTGGAGGAGAGAGTCGCGGGTTTGAGCTTTTCTATGATGATGGTGCTGGTTCTGGTCTTAGGCCTTTGCCTCTGAGCATGTCGGAGTTTCTTCTGGGATCTGGGTTTGATAGACTCTTGGAACAACTTTCTCATGTTGAGATCAATGGTATTGGGAGGTACGAGAACCCTGCTGCATCAAAAGCTGCCATTGATTCTCTTCCCACTATTGAGATTGATGAGGGTCATTTGACTATGGAATCACATTGTGCAGTTTGCAAGGAGCCTTTTGAATTGGGCATTGCAGTGAGGGAAATGCCTTGTAAGCACATATATCATCCTGAGTGTATATTACCATGGCTTGCACTTCATAATTCTTGCCCTGTTTGTCGTCATGAGTTGCCTATTGATGCCCCAAATCCAAATCCAAATCCAAATCAAAATCCACTGAATGAAGAAGAGAATGTGGGGTTGACTATTTGGAGGTTACCTGGTGGTGGTTTTGCGGTGGGGAGGTTTTCCGGTGGGAGAAGAGGTGCTGAGAGAGATCTACCTGTTGTTTACACTGAAATGGATGGTGGGTTTAACAATGGTAGTGAGCCTAGGAGGATTTCTTGGTCTTCTAGAGGGAATAGACGGAGAGAGAGTGGTGGGTTGAACAGGTTTTTTCGCAATTTGTTTGGTTGCTTCAGAGGTGGAGTTGGAACTCAACGCTCTACTTCTACTAGAGAGTCTCGATCTTTAAGGGCAAGTTCATCTCGTTCTAGTATGGATCCCTCATCACGTTCCCGTAGGTCTTGGTCTATGGATGTAAACAGTGGTGGAATGTGA 1149 0.4952 MMMSSGTSSYWCYRCSRSVRAWRQDTVVCPDCDDGFLEEIENPTRSVHVDGRRRRFPAAAMYMIGQRTGFDQNSRPALRRTRRNGGDRSPFNPVIVLRGGGSSEGAEGGGGGGGGGESRGFELFYDDGAGSGLRPLPLSMSEFLLGSGFDRLLEQLSHVEINGIGRYENPAASKAAIDSLPTIEIDEGHLTMESHCAVCKEPFELGIAVREMPCKHIYHPECILPWLALHNSCPVCRHELPIDAPNPNPNPNQNPLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERDLPVVYTEMDGGFNNGSEPRRISWSSRGNRRRESGGLNRFFRNLFGCFRGGVGTQRSTSTRESRSLRASSSRSSMDPSSRSRRSWSMDVNSGGM 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2888g00008 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 243 IPR013083 -
Gabi2888g00008 382 Pfam Protein of unknown function (DUF1117) 262 364 IPR010543 -
Gabi2888g00008 382 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Gabi2888g00008 382 FunFam E3 ubiquitin-protein ligase RING1-like 158 243 - -
Gabi2888g00008 382 SUPERFAMILY RING/U-box 176 249 - -
Gabi2888g00008 382 MobiDBLite consensus disorder prediction 72 119 - -
Gabi2888g00008 382 SMART ring_2 196 236 IPR001841 -
Gabi2888g00008 382 MobiDBLite consensus disorder prediction 340 382 - -
Gabi2888g00008 382 Pfam Ring finger domain 195 237 IPR001841 -
Gabi2888g00008 382 CDD RING-H2_RNF126-like 196 237 - -
Gabi2888g00008 382 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Gabi2888g00008 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2888g00008 Gabi-Chr2888 161277 162974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2888g00008 135 243 C3H Transcription Factor Family AT5G01980 42.202 1.52e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2888g00008 K11982 - gmx:100807324 556.984