Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2888g00004 | ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATGGAAAATGGGTTTCCTGGATTTATACATGAGAGGCGTGCATTGCGTGTTCATACAGCACGTCCTAGTAATTCCAATTCACTCACTTTTCTTGTGACAGTTCTCCTGTTATTCATGATACTGAACTCTCACCAAATGTCACCAAATTTTCTGCTTTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGCTAAGGATGTATGCAACATGTCAACAGCTTCAAGCGCAGGCCCAAGCTCATGCGGCAGCAGCCAGTGGCCTTCTTGGCCACACGGAACTGCGGTTGCATATGCCACCATCAATAGCACTCACAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACGTTAAGAGCTCTGGATTCAGATAATGTTTCTGCTTCACCTTCTATGACTGAAGAAGAGATAAATGCTCTTCCCGTCCACAAATACAAGGTTTCTGGTCCCCAAAGTATTTCCTCAATGCCACAAGCTTCATCTTCCACTTCTGCTGAGAAGAAGCAAGATAATTCGAATGCAGTTGGAAGCATCAAAGCCTCTGATGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGAGACGTACTGCGTAGCTTGCCCTGCTTGCATCAGTTTCACGCTAATTGCATTGATCCCTGGCTGCGGCAACAAGGGACTTGCCCTGTCTGTAAATTCCGAGCAGGATCCGGGTGGAATGACAGTGGACATAATGATATCGCTGACATGGTTTGA | 819 | 0.4591 | MSFVFRGTRADMENGFPGFIHERRALRVHTARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALTSRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSASPSMTEEEINALPVHKYKVSGPQSISSMPQASSSTSAEKKQDNSNAVGSIKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNDSGHNDIADMV | 272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2888g00004 | 272 | CDD | RING-H2_PA-TM-RING | 211 | 253 | - | - | |
| Gabi2888g00004 | 272 | SMART | ring_2 | 212 | 252 | IPR001841 | - | |
| Gabi2888g00004 | 272 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 258 | IPR013083 | - | |
| Gabi2888g00004 | 272 | MobiDBLite | consensus disorder prediction | 173 | 202 | - | - | |
| Gabi2888g00004 | 272 | Pfam | Ring finger domain | 211 | 253 | IPR001841 | - | |
| Gabi2888g00004 | 272 | PANTHER | TARGET OF ERK KINASE MPK-1 | 1 | 258 | - | - | |
| Gabi2888g00004 | 272 | SUPERFAMILY | RING/U-box | 207 | 256 | - | - | |
| Gabi2888g00004 | 272 | ProSiteProfiles | Zinc finger RING-type profile. | 212 | 253 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2888g00004 | Gabi-Chr2888 | 131488 | 137285 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2888g00004 | 1 | 272 | C3H Transcription Factor Family | AT3G55530 | 77.174 | 1.26e-142 | 400 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2888g00004 | K16283 | - | gmx:100777936 | 457.988 |