Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2885g00040 ATGAAGAAAACACCAAGCCCCAGTTTGCATCAATCTAGCCAAAGATCACACATTGGTTTTCTCCAAGATAGTAATGACACAAAGAGGCACACTCCCAAGACTAATCCTGCACTGAAGTTTTTCAAGAAATGTGCTGTTGTTTTTACATTGATTCTCTCTGGTAAAAGCAAAACAGCCTCAAAAGTTGTAGGAAGTGATGGCAGAAAGAATATATCAAAAGTCAGAGGGGTGGTATCATCTTCAACTGATTTGTCATCTGAAAGTAAAAAGAATTCATCAAAATGGAAGTTTTCTTATTCTTATGCATCATCTAGCACTGCAAGTGGACAGCTTGGACTTAGCAACTTCTCCTTTGAAGAGATTTACAGGTCAACTGCAAAATTCTCTCCAGATAATCAGATTGGGGAAGGTGGGTTTGGAACAGTTTATAAGGGAAAACTTAATGATGGATCTATTGTAGCAGTGAAGCGTGCCAAGAAGGATGTACTACACAAACACTTGCACGAGTTCAAGAACGAAATATACACCTTGTCAAAAATAGACCATCTGAATCTTGTCAGGTTATATGGATATTTGGAGCATGGAGATGAGAAGATCATTGTTGTTGAATACGTTGGTAATGGAACACTTCGGGAGCATCTAGATGGTACTCGAGGAGATGGACTAGAAATTGGTGAACGTCTAGACATAGCAATTGATGTAGCTCGTGCAATCACATACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAGGCATCAAACATCCTAATCACTGAGAACCTAAGGGCCAAAGTGGCAGACTTTGGTTTTGCACGGTTGTCTGATGACCCTAATGCAACCCATATTTCAACTCAAGTTAAAGGAACAGCTGGATATATGGATCCTGAGTACCTGAGAACATATCAACTCACTGAAAAGAGTGATGTTTATTCCTTTGGCGTATTGCTTGTTGAAATGATGACAGGAAGACATCCCATTGAACCACAGAGACCCCTCAATGAGAGAGTGACAATCAGATGGGCAATGCAGATGATGAAAGAAGGGGGTGCTTTATTTGCCATGGACCCAAGACTGAGAAGAAGTTCAGCCTCCAACAAGGCAGTGAAGAAGGTTCTCAAGCTAGCTTTCCAATGCATTGCATCTTCCAGACAATCACGGCCAGCTATGAAGAGGAAGCAACAATGTCGTCATTAG 1206 0.4071 MKKTPSPSLHQSSQRSHIGFLQDSNDTKRHTPKTNPALKFFKKCAVVFTLILSGKSKTASKVVGSDGRKNISKVRGVVSSSTDLSSESKKNSSKWKFSYSYASSSTASGQLGLSNFSFEEIYRSTAKFSPDNQIGEGGFGTVYKGKLNDGSIVAVKRAKKDVLHKHLHEFKNEIYTLSKIDHLNLVRLYGYLEHGDEKIIVVEYVGNGTLREHLDGTRGDGLEIGERLDIAIDVARAITYLHMYTDNPIIHRDIKASNILITENLRAKVADFGFARLSDDPNATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIEPQRPLNERVTIRWAMQMMKEGGALFAMDPRLRRSSASNKAVKKVLKLAFQCIASSRQSRPAMKRKQQCRH 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2885g00040 401 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 92 204 - -
Gabi2885g00040 401 SMART serkin_6 128 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2885g00040 401 Gene3D Transferase(Phosphotransferase) domain 1 205 400 - -
Gabi2885g00040 401 Gene3D Phosphorylase Kinase; domain 1 86 204 - -
Gabi2885g00040 401 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2885g00040 401 SUPERFAMILY Protein kinase-like (PK-like) 107 394 IPR011009 -
Gabi2885g00040 401 CDD STKc_IRAK 134 394 - -
Gabi2885g00040 401 Pfam Protein tyrosine and serine/threonine kinase 131 395 IPR001245 GO:0004672|GO:0006468
Gabi2885g00040 401 MobiDBLite consensus disorder prediction 1 34 - -
Gabi2885g00040 401 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 95 395 - -
Gabi2885g00040 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Gabi2885g00040 401 ProSitePatterns Protein kinases ATP-binding region signature. 134 160 IPR017441 GO:0005524
Gabi2885g00040 401 ProSiteProfiles Protein kinase domain profile. 128 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2885g00040 401 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 205 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2885g00040 Gabi-Chr2885 334015 341002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2885g00040 100 393 Receptor kinase-like Gene Family AT1G79620 43.522 5.70e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Gabi2885g00040 PK_Tyr_Ser-Thr 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2885g00040 - - gmx:100811511 609.372