Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2885g00013 ATGTCAGAGGGTCTTGAGTTTTGCGGAACAATGCATGGTCACACTGACATGGTGACAGCCATCGCTACTCCAATGGACATCAATAACTCAGAGATAATAGTAACATCATCACGAGACAAATCGATTATCATGTGGGATCTTACCAATAAGGACGACGACGACTACGGTGTCCCCTGTCTCCGGCTCACCGGCCATTCTCGCTCCGTTCAGGATGTCACCCTTTCCTCCGACGCACAATACGCTCTTTCCAGCTCCTGTGACGGAGAACTCCGCCTTTGGGACCTCGCCGACGGCACCTCCCTCCGCCGCTTCATCGGCCACAAAAAGGGAGTGCTTTCCGTTGCGTTCTCAATGGATTACAACCGTCAGATCGCGTCGGCATCTCGCGACCGCACGATCAAGCTCTGGAACATTCAAGGCGAGTGCAAGTACACCGTTGAAGAGAGAGAAGAAGACGGAGACGAAGAGGAAGAAGGAGACGGAGAGGGAGATAGCCACTCCGATTGGGTGATCTGCGTCCGGTTCGGGCATGAGAGTCTTGTTTCTTGTTCAAGGTATGGTACCGTTAAAGTTTGGGATTTGAAGTTTAATAATCTTGAGCTGAGGCACACCCTTGATGGCCACACTGGCTATGTTAACTGCATTGGTGTTTCACCTGATGGGTCTGTTTGCGCTAGTGGTGGGGATGGTGGTGTTATTCCGATATGGGACTTGGCTGAGGGAAAGAGGCTTTTCTCTTTTGATGTTGAATCCAACGTTCATGCACTCTGCTTCTGTCCCACTAGGTATTGGCTCTGTGCTGCCACTGACCACAGCATCAGAATATGGGATTTGAAGAGTAAGGATATTCGTCAGGATTTGAAGGTTCCCATCGACATTAATGAGGAGGAGAATGATGATGAGTCTATCTACTGTACAAGCTTGAGTTGGAGTGCAGATGGAAACACTTTGTTCGGTGGCTATTCTGATGGTGTTGTCAGAGTTTGGGCAATTCCAACATACTTGGAAAGTGACAAATCTTCGATTTTGGATAAGGTTGAAGTTGCGAGGAAACATTTTGGGAAGGTGAACACGATAGTGATGAACGCGATCATGGATGCTTGTGTTCATTGCGTTGACCTTGATTCAACTCTGAAGATATTCCATGAGATGAAAAACCCCACGGGTTGTGGTGTGGATACTGTCATATATGCTACGCACTTGAAGGGATTCGGATGTGAGGCAAGAAGAATCAATGAAGCTTTTCAATTGCTTGAATTTGTGGAAAATGGTACTGCCATGGGAAGTCCAAAGTTGTCAGCTTATAGTTTGTTAAATCAATCAACGAAAAGAGCTAGTTCCAACATCCAGACATCATCACCCAAGCAGGAAAATAATTCCATGGTTTCCCCAAAAGCAATGCTTAAGGAAATGTCACAGAGGCCCTCTGATACTAAGCTTGAGAGTCCAACCAAAAAGCTTAAGCATGACAATCTGAGCAACACCAAGTACCTTGCTGGGGACTTTTATAGCCTTGCTGATCTTAGCCATATTGAAACTCACTATTTTATGCAGACCCCTTGTGCTTCAATGATCAATGATCATCCCCATCTTAAGGCTTGGTGGATGGATATCTCTTCTAGGCCTGCTTTCATCAAGGTTGTGGGAGGTATGACTCTTCACCAGAAAACTCTTCACATTTCTATTTTCTATTTTATCTCATTAAAATTTAACCCAACATTCTGTCCCAGTAGGTATTGGCTCTGTGCTGCCACTGACCACAGCATCAGAATATGGGATTTGAAGAGTAAGGATATTCTTCAGGATTTGAAGGTTCCCATCGACATTAATGAGGAGGAGAATGATGACGAGTCTATCCACTGTACAAGCTTGAGTTGGAGTGCAGATGGGAACACTTTGTTCGGTGGCTATTCTGATGGTGTTGTCAGAGTTTGGGCAATTCCAACATTTGTAAAGCGTGTGGTTTTTTGA 1971 0.4556 MSEGLEFCGTMHGHTDMVTAIATPMDINNSEIIVTSSRDKSIIMWDLTNKDDDDYGVPCLRLTGHSRSVQDVTLSSDAQYALSSSCDGELRLWDLADGTSLRRFIGHKKGVLSVAFSMDYNRQIASASRDRTIKLWNIQGECKYTVEEREEDGDEEEEGDGEGDSHSDWVICVRFGHESLVSCSRYGTVKVWDLKFNNLELRHTLDGHTGYVNCIGVSPDGSVCASGGDGGVIPIWDLAEGKRLFSFDVESNVHALCFCPTRYWLCAATDHSIRIWDLKSKDIRQDLKVPIDINEEENDDESIYCTSLSWSADGNTLFGGYSDGVVRVWAIPTYLESDKSSILDKVEVARKHFGKVNTIVMNAIMDACVHCVDLDSTLKIFHEMKNPTGCGVDTVIYATHLKGFGCEARRINEAFQLLEFVENGTAMGSPKLSAYSLLNQSTKRASSNIQTSSPKQENNSMVSPKAMLKEMSQRPSDTKLESPTKKLKHDNLSNTKYLAGDFYSLADLSHIETHYFMQTPCASMINDHPHLKAWWMDISSRPAFIKVVGGMTLHQKTLHISIFYFISLKFNPTFCPSRYWLCAATDHSIRIWDLKSKDILQDLKVPIDINEEENDDESIHCTSLSWSADGNTLFGGYSDGVVRVWAIPTFVKRVVF 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2885g00013 656 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 431 558 IPR010987 -
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 49 IPR001680 GO:0005515
Gabi2885g00013 656 SUPERFAMILY WD40 repeat-like 304 650 IPR036322 GO:0005515
Gabi2885g00013 656 SUPERFAMILY GST C-terminal domain-like 491 568 IPR036282 -
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 195 IPR001680 GO:0005515
Gabi2885g00013 656 Pfam Glutathione S-transferase, C-terminal domain 491 542 IPR004046 -
Gabi2885g00013 656 Pfam WD domain, G-beta repeat 10 46 IPR001680 GO:0005515
Gabi2885g00013 656 Pfam WD domain, G-beta repeat 201 237 IPR001680 GO:0005515
Gabi2885g00013 656 Pfam WD domain, G-beta repeat 567 593 IPR001680 GO:0005515
Gabi2885g00013 656 Pfam WD domain, G-beta repeat 61 94 IPR001680 GO:0005515
Gabi2885g00013 656 Pfam WD domain, G-beta repeat 306 329 IPR001680 GO:0005515
Gabi2885g00013 656 Pfam WD domain, G-beta repeat 165 193 IPR001680 GO:0005515
Gabi2885g00013 656 Pfam WD domain, G-beta repeat 99 137 IPR001680 GO:0005515
Gabi2885g00013 656 Pfam WD domain, G-beta repeat 250 277 IPR001680 GO:0005515
Gabi2885g00013 656 Pfam WD domain, G-beta repeat 621 645 IPR001680 GO:0005515
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 246 IPR001680 GO:0005515
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 139 IPR001680 GO:0005515
Gabi2885g00013 656 Gene3D - 564 650 IPR015943 GO:0005515
Gabi2885g00013 656 SMART WD40_4 198 237 IPR001680 GO:0005515
Gabi2885g00013 656 SMART WD40_4 596 646 IPR001680 GO:0005515
Gabi2885g00013 656 SMART WD40_4 4 46 IPR001680 GO:0005515
Gabi2885g00013 656 SMART WD40_4 97 137 IPR001680 GO:0005515
Gabi2885g00013 656 SMART WD40_4 156 193 IPR001680 GO:0005515
Gabi2885g00013 656 SMART WD40_4 280 330 IPR001680 GO:0005515
Gabi2885g00013 656 SMART WD40_4 240 277 IPR001680 GO:0005515
Gabi2885g00013 656 SMART WD40_4 555 593 IPR001680 GO:0005515
Gabi2885g00013 656 SMART WD40_4 55 94 IPR001680 GO:0005515
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 139 - -
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 242 - -
Gabi2885g00013 656 ProSitePatterns Trp-Asp (WD) repeats signature. 124 138 IPR019775 -
Gabi2885g00013 656 Gene3D - 5 334 IPR015943 GO:0005515
Gabi2885g00013 656 SUPERFAMILY WD40 repeat-like 10 377 IPR036322 GO:0005515
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 103 IPR001680 GO:0005515
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 567 602 IPR001680 GO:0005515
Gabi2885g00013 656 MobiDBLite consensus disorder prediction 146 165 - -
Gabi2885g00013 656 Gene3D - 441 548 - -
Gabi2885g00013 656 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 573 647 IPR045223 GO:0043022|GO:0045182
Gabi2885g00013 656 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Gabi2885g00013 656 MobiDBLite consensus disorder prediction 148 163 - -
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 645 IPR001680 GO:0005515
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 49 - -
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 95 - -
Gabi2885g00013 656 FunFam Receptor for activated C kinase 1 8 334 - -
Gabi2885g00013 656 Gene3D Tetratricopeptide repeat domain 335 440 IPR011990 GO:0005515
Gabi2885g00013 656 CDD WD40 13 330 - -
Gabi2885g00013 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 329 IPR001680 GO:0005515
Gabi2885g00013 656 ProSitePatterns Trp-Asp (WD) repeats signature. 33 47 IPR019775 -
Gabi2885g00013 656 PRINTS G protein beta WD-40 repeat signature 180 194 IPR020472 -
Gabi2885g00013 656 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Gabi2885g00013 656 PRINTS G protein beta WD-40 repeat signature 124 138 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2885g00013 Gabi-Chr2885 96503 101514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2885g00013 481 557 Glutathione S-transferase Gene Family AT3G62760 47.826 1.43e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2885g00013 K14753 - mnt:21400405 412.535