Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2885g00006 ATGGATTCAGTGCCCGCTGATGTCTCTAATTCACCTCCTATTAAAGATCCATCTACTTTAACTCCTGTTAAAGAGACAGATGGACAAGCTTCTGCTGCTGTAGCCTCTGGGCAAGATAATTCTGCTCAAGAAGTGCCATCTAGACTATCTTCCACTGGCATATCATCTTGGGCCAAAAACTTGAAAATTCCTCAGCCATTTTCTGGTTCCCAAGATGACGCATCAAATGGTAATGTTGGGAAATCAACTTTTGCACGCATCACTAGTAATTTAGGGTTGCGGTTGTCTCCAAAATCTCCTGTGGTGGATGACAGTTCCAGTGAAACAGCAGTACAATCTAATTTGTTTGGAAGTATTACAAAAGGCCTGGTTGACTCTTCTAAGAATGCGGTGAAAGCTGTGCAGGTTAAGGCACGACATGTTGTTTCTCAGAATAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACAGAAAACATCATTGCAATGGGGTTTCCTGCTGGCGACATGAGCTCTGGGTTTTTTGGTTATGTCGAAGGTTTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAGACTCACCATAAGGGGAAATACAAAGTATATAATCTTTGTTCTGAGCGGCTGTATGATGCATCATTGTTTGAGGGGAAGGTAGCTAGCTTCCCATTTGATGATCATAATTGCCCACCAATTCAACTAATTATATCATTTTGCCAAAGTGCGTACTCATGGTTGAAAGAAGACATCGAGAATGTCGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACCGGGTTGATGATTTCTAGTCTACTCTTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCTATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGGATTTTGACTTACTTCAATGGCGAAATCCCACCTGCCCGGAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTACTGGATCAGGCCCTCCATAACTGTTTCAGATCATAGGGGTGTGTTGTTCTCAACCAAAAAGCATCCGCGAACCAAGGAACTTTTGCCAGAAGATTTTTGGTTTAGTGCGCCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCAGGAGAGCCTGGTCTTACAGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAATATTGAATACCAGTGATCTCGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTCTTGGTTGAGGTTGTGCTAGTGGATTATAATGGTGACGTTGTAACTACCAAACCTGAAACTACTACAAAGAAATCAGATGAGAGTCCAAGTAACAGTCTCACCAGCACTAGCCCCACCCCAGTTGAAGTGAGCACCCCTGCCCCGAACCCTGACAAAGAGTCAGGGGGTCGTGATAAAGACGATGTGTTTTCAGATGGTGAGACAGAGCATCCTGCTTCTTCAAGTAGCAAGCAAACAAAAGCACCTTCTGAAGCAGTTGAAACAGTTACAAATGCCACCAGAGAGTCCGAGTCAAACAAAATTTCAAACCAAATCTCAAATTTAACACATGCAACAGAACAAGTTTCTTTGGGAAATAAGAGCTCTACAACAATTCAAAGTGCAGTTGAGCCAAAAAGGGATGCTGATGGAAGAACAGTGTCCAGTCTCGAGGTGCCCAGCTCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACATTCGGAGATGATGAAGACTATGAAAGTGATTGA 1875 0.4245 MDSVPADVSNSPPIKDPSTLTPVKETDGQASAAVASGQDNSAQEVPSRLSSTGISSWAKNLKIPQPFSGSQDDASNGNVGKSTFARITSNLGLRLSPKSPVVDDSSSETAVQSNLFGSITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERILTYFNGEIPPARRCMLRGFRLHRCPYWIRPSITVSDHRGVLFSTKKHPRTKELLPEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKILNTSDLDGFDKRKLPSPGFLVEVVLVDYNGDVVTTKPETTTKKSDESPSNSLTSTSPTPVEVSTPAPNPDKESGGRDKDDVFSDGETEHPASSSSKQTKAPSEAVETVTNATRESESNKISNQISNLTHATEQVSLGNKSSTTIQSAVEPKRDADGRTVSSLEVPSSESEFKAMAADASVFTFGDDEDYESD 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2885g00006 624 MobiDBLite consensus disorder prediction 476 493 - -
Gabi2885g00006 624 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Gabi2885g00006 624 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Gabi2885g00006 624 CDD PTP_PTEN 157 322 IPR045101 GO:0016791
Gabi2885g00006 624 MobiDBLite consensus disorder prediction 1 51 - -
Gabi2885g00006 624 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Gabi2885g00006 624 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Gabi2885g00006 624 SMART PTEN_C2_2 331 459 IPR014020 -
Gabi2885g00006 624 MobiDBLite consensus disorder prediction 519 580 - -
Gabi2885g00006 624 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Gabi2885g00006 624 MobiDBLite consensus disorder prediction 467 597 - -
Gabi2885g00006 624 MobiDBLite consensus disorder prediction 503 518 - -
Gabi2885g00006 624 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Gabi2885g00006 624 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 589 - -
Gabi2885g00006 624 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2885g00006 Gabi-Chr2885 58308 64404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2885g00006 33 624 Protein tyrosine phosphatase (PTP) family AT3G19420 70.647 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2885g00006 K01110 - gmx:100784003 1077.77