Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2884g00001 ATGTCCACTAAGCCCCAATCTCATTTGCCTTCCCATTTGATGAGTCTCTTGGGTCTGTTTCATGCTCTACATGTGGGCTTTGCTCTCCATCTGGGCCAGGTCCACTTCTTCTCCTTCTACTATAAACCTTCAGCAGCCTTCAATCACCTTCACTCTCTTGTTGTGGTTTCCTTCTACAAGTTCGCTGATTTCCCTGACCATGCCCACATGCGAAAGCCCTTGAAGCAACTCTGTCAACAACTTCGTGTTTCAGGTGGTATTATTCTTGCGCCTGAAGGAATCAATGGCAGCATATGTGGCACTAGGGAGTCGGTGGAGAAAGTTCTTGCACTTGTACAGAGCGATGATCGTCTGAAGGGGCTAAGACAAGTGGAATCGCCTGTCAGTCCTGAGGAGGAAGCCATCCATCATGGACACAGTGCCAGTTCTCCTCTTGCTGCAGGGGAAGATGCTCCCTATGTGAGGGTCAAGTTGAAGAAAGAGATTGTCACTCTCGGAATGCCTACTGTGTCACCCGTCGAAAGGGTTGGAAAGTATGTTGGCCCAAAAGATTGGAATGCTTTGATTAGAGATCCAGATACAGTGAGTATTGATGTGCGCAATAACTATGAAACCAGAATAGGAAAGTTTAAGGGAGCAGTTGATCCTTGTACTACATCATTTCGTGAATTCCCATCTTGGGTGGAGGAACATTTCCAGCTTACAAAAAAAGATGTTGAGCAACCAAAAGTTGAGGTAAACAATTCAGTCCAAAGTGCTGAAAAAGAGATAGAGAATCCAAAACAACATATGCCTCAACGTGTTGCAATGTATTGCACTGGAGGTATTCGATGTGAGAAAGCATCAAGTCTACTTCTCAGCAAAGGATTCAAAGAGGTTTATCACCTGGAAGGTGGGATTCTGAAATATCTTGAGGAGGTTCCAGGGACAGACCTATGGGAGGGAGAGTGCTTTGTTTTTGACAAGCGAGTCTCTGTGGAGCATGGTTTGGTGCAAGGAAATTTCAAGCTCTGCTATGGTTGTAAGCAGCCTGTGAGTGATGCTGACATGCAAGCCCCAGAATATGAATATGGAGTCCCTTGTCCTCACTGTTTTTCACTGAAATCAGATGAAGAGAAAGAGAGAGCTCGTGCTCGACAAAGACAATTTGAGAGATGGGGAATCATAGGTGGTCCTGATAAGGGTCGCAGGCCAACATGTGACTCAGATAGTGCTAGCCTGAAACCAATCAAGCTTTCACATTCTGTTTAA 1251 0.454 MSTKPQSHLPSHLMSLLGLFHALHVGFALHLGQVHFFSFYYKPSAAFNHLHSLVVVSFYKFADFPDHAHMRKPLKQLCQQLRVSGGIILAPEGINGSICGTRESVEKVLALVQSDDRLKGLRQVESPVSPEEEAIHHGHSASSPLAAGEDAPYVRVKLKKEIVTLGMPTVSPVERVGKYVGPKDWNALIRDPDTVSIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEEHFQLTKKDVEQPKVEVNNSVQSAEKEIENPKQHMPQRVAMYCTGGIRCEKASSLLLSKGFKEVYHLEGGILKYLEEVPGTEXLWEGECFVFDKRVSVEHGLVQGNFKLCYGCKQPVSDADMQAPEYEYGVPCPHCFSLKSDEEKERARARQRQFERWGIIGGPDKGRRPTCDSDSASLKPIKLSHSV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2884g00001 417 CDD RHOD_YceA 177 305 - -
Gabi2884g00001 417 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 51 378 IPR020936 -
Gabi2884g00001 417 Pfam UPF0176 acylphosphatase like domain 54 162 IPR040503 -
Gabi2884g00001 417 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 159 338 IPR036873 -
Gabi2884g00001 417 Gene3D - 42 163 - -
Gabi2884g00001 417 Hamap tRNA uridine(34) hydroxylase [trhO]. 51 349 IPR020936 -
Gabi2884g00001 417 MobiDBLite consensus disorder prediction 376 417 - -
Gabi2884g00001 417 ProSiteProfiles Rhodanese domain profile. 190 312 IPR001763 -
Gabi2884g00001 417 Pfam Rhodanese-like domain 184 305 IPR001763 -
Gabi2884g00001 417 SMART rhod_4 180 309 IPR001763 -
Gabi2884g00001 417 Gene3D - 164 347 IPR036873 -
Gabi2884g00001 417 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2884g00001 Gabi-Chr2884 14711 18424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2884g00001 38 405 Sulfurtransferasese or Rhodanese AT2G40760 73.458 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2884g00001 - - gmx:100784854 639.417