Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2881g00037 ATGCAAATTTTTGTGAAGACTTTGACTGGAAAGACTATAACTTTGGAGGTGGAATCCTCAGATACCATTGATAATGTGAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATTTTTGCCGGGAAGCAGCTTGAAGATGGAAGAACCCTTGCTGATTACAACATTCAGAAGGAATCCACTCTGCACTTGGTTCTACGTCTTCGTGGGGGGATGCAAATCTTTGTTAAGACTTTAACTGGGAAGACCATAACTTTGGAGGTTGAAAGTTCTGATACCATCGATAATGTGAAGGCAAAGATCCAGGACAAAGAGGGCATCCCACCGGACCAGCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGATGATGGACGTACCCTTGCTGATTATAATATCCAGAAGGAATCTACTCTTCACTTGGTTTTGCGGCTTCGTGGTGGTATGCAAATATTTGTGAAGACCCTAACGGGGAAGACTATCACATTGGAGGTGGAAAGTTCTGATACAATTGATAATGTGAAAGCGAAGATCCAGGACAAGGAGGGTATTCTCCCAGATCAGCAGCGACTTATTTTTGCTGGCAAGCAATTGGATGATGGTCGTACATTGGCAGATTACAATATTCAGAAGGAATCGACCCTTCATCTTGTCCTTCGCCTTCGTGGTGGCTTTTAA 690 0.4435 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLVLRLRGGF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2881g00037 229 FunFam Polyubiquitin 3 1 76 - -
Gabi2881g00037 229 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Gabi2881g00037 229 PRINTS Ubiquitin signature 53 74 IPR019956 -
Gabi2881g00037 229 PRINTS Ubiquitin signature 32 52 IPR019956 -
Gabi2881g00037 229 PRINTS Ubiquitin signature 11 31 IPR019956 -
Gabi2881g00037 229 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Gabi2881g00037 229 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Gabi2881g00037 229 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Gabi2881g00037 229 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Gabi2881g00037 229 Gene3D - 153 229 - -
Gabi2881g00037 229 Gene3D - 1 76 - -
Gabi2881g00037 229 Gene3D - 77 152 - -
Gabi2881g00037 229 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Gabi2881g00037 229 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gabi2881g00037 229 PANTHER UBIQUITIN 77 156 - -
Gabi2881g00037 229 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Gabi2881g00037 229 CDD Ubl_ubiquitin 1 76 - -
Gabi2881g00037 229 CDD Ubl_ubiquitin 77 152 - -
Gabi2881g00037 229 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Gabi2881g00037 229 CDD Ubl_ubiquitin 153 228 - -
Gabi2881g00037 229 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Gabi2881g00037 229 FunFam Ubiquitin-60S ribosomal L40 fusion 77 153 - -
Gabi2881g00037 229 SMART ubq_7 77 148 IPR000626 GO:0005515
Gabi2881g00037 229 SMART ubq_7 1 72 IPR000626 GO:0005515
Gabi2881g00037 229 SMART ubq_7 153 224 IPR000626 GO:0005515
Gabi2881g00037 229 FunFam Polyubiquitin 3 154 228 - -
Gabi2881g00037 229 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2881g00037 Gabi-Chr2881 404264 405177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2881g00037 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 7.79e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2881g00037 K08770 - mnt:21412234 438.728