Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2881g00036 ATGGCTTGCAAGAGCATCCAATGCAGTTCTTCATCTCAGATGACGTGCAAATATGATGTGTTTGTTAGCTTCAGAGGAGAAGACACACGTAACAACTTCACTGATCATCTTTTTGCTGCTCTCCATAGAAAAAACATTGTTGCCTTCAGAGATGATACAAAGCTCAAGAAAGGCGAATCCATAGCACCTGAGCTCCTACAAGCAATTGAAGGCTCTCGGATCTTTGTTGTTGTCTTCTCAAAAAACTACGCTTCCTCAACATGGTGCTTGCGTGAACTGGCAAAGATCCTAGATTGCGTTCAAGTATCTGAAAAACGTGTTCTGCCTATTTTTTATGATGTTGATCCGTCTAAGGTTCGAAAACAAAGTGGGAGTTATGAGAAAGCTTTTGTTGAACATGAAGAAAGATTCAAAGAAGATTTAGAGATGATGTTGGAAATGCAAAGATGGAGAGGAGCTCTGACACAAGTGGCCAATCTCTCCGGTTGGGACATACGGGATAAGCCACAAAGTGCAGAGATTGAAAAAATTGTTAAAGAGATAATAAGTATATTGGATCTGAAAATTTCAAGTCTTCCAAAAGATCTATTTGGGATAGGATCTCCGATAGAAGAATTGGAAAATCTTTTACACTTGAGCTCAGTTGATGATGTTCGGGTTGTAGGAATTTCTGGAATGGGGGGAATAGGAAAGACAACTCTTGCTACTGTTTTATATGATAAAATCGCTCATCAATATGATGCTTGCTGTTTTATTGATGATGTAAGCAAAATTTATAGAGATTATGGTCCAATTGGTGCAGCAGAGCAACTTCTATGTCAAACTCTAAATGAAGAGCACCTTCAAATATGTAATCTTTATGGTGCAGCTAATTTGATACGACATAGGCTGCGAAATGTAAGGGCCTTTATAGTTCTTGATAATGTTGGTGAAGTTGAACAACTAGAGAAATTAGCTGTCAATCGTGACTGGTTAGGTGCTGGGAGTAGAGTCATAATAATTTCTAGAGACAAGCATATCTTACAAGAGTATGGAGTGGATGTGATTTATAATGTTCAACTCTTGAATTATGGTAATGCACTTAAATTGTTCTGTGCAAAGGCTTTCAAAAGTGATGATATTATGAGAGATTATGAATGGATGACATATGATGCAGTTCGATATGCTAATGGCCTGCCACTGGCAATTAAAGTATTCGGCTCATTTTTGTTTGGTCGAGATATCTCTGAGTGGAGAAGTTCATTGGCTAGACTGAGAGAAAATCCAAGCAAAGATGTCATGGATGTGTTGCGAGTAAGTTTTGATGGTCTCGATGATACGGAAAAAGAAATATTTTTAGATATTGCTTGTTTCTTTGACGATCAGTATGAGAGATATGTAAAGGAAATCCTAGATTTTCGTGGATTTCATCCAGAAATTGGTATACGAGTTCTCCAAGATAAATCTCTCATAACCCATGATCATTGGGGGAGAATTCAAATGCATGACCTGTTGAAAGAATTGGGCAGGAGTATTGTTCGAGAAAAATCACCTAAAGAGCCAAGAAAGTGGAGCAGGTTGTGGGACTACAAGGATCTTCAAGATGTGGCGTTAGAAAATAAGGAAGCAGAAAATCTTGAAGCCATAGTAATGCCAAAGTATCCTTCATACAAGTATCGAGAAACAACAATGAGGGTGGATGCTCTATCAAAAATGAGTCACCTTAAGTTACTCATACTTTGGAATATGAATTTTTCAGGAAGCCTCACTTATCTATCCAATGAATTAGGATATCTTTGTTGGGATAAATATCCTTTCACGTGTTTGCCATCAAATTTTCAGCCAGATAAACTTGTTGAATTGAAACTGCCAAACAGTAGCATCAAACAACTATGGGAAGGCATAAAGGTCCCTAATCTTGAGAGGCTGACACTTGAAGGATGTATAAAACTTGTGCAGATCGATCCGTCCATTGGTATTCTAAGAAAGCTTACTGATTTGGATTTGAAAAATTGTAAAAATCTGGTCAGTATTCCCAACAACATTTTTTATCTCAGTTCTCTCGGAACACTAAATCTCTCTGGCTGTTCAAAATTATTTAAGAATCAGCTGTTAGAGAATGCAAGGCATGCAGAACATTTAGAGAAGCTTGATCTGAATGATAGTACTATCCAATGCCAGTCAAAGTCCTCCATCTCTAAAATTCTAATGTTGCCTATCCGTGTTTTCTATTCTCGAAGACAAGAAGGGTCAGTTGGTTTGTTGTTGCCTTCTTTGCCTCGTTTCCCATGTTTGTATGTTCTTGACCTGAGTTTCTGCAATCTACTTCAAATCCCTGATTCCATTGGAGGGTTACATTGTTTAGTACACTTAAATTTGGGGGGAAACAAGTTTGTTACACTACCTTGTAGCATCAAGGAGCTTTCCAAACTTAAATTTTTGAACTTGGAGCACTGTAAGCAGCTTAAATATTTGCCTGAGCTTCCATGTTTGGTGAATCTTGACCTAAGTTTCTGCAATCTAGTTCAAATCCCTGATGCCATTTGGGGGTTACATTGTTTAGAAAGATTAAAATTGGGAGGAAACAATTTTGTTACACTACCTTCTAGCATCAAGCAACTTTCCAAACTTCTATCTTTGAATTTGGAGCATTGTAAGCAGCTGAAATATTTGCCTGAGCTCCCACCATGTACTGTCTTGCCAGAAAGAAGAGGATATCATGCAGGATTAAATATTTTCGATTGCCCCAATCTGAGTGAGATGGAATGCTGTCATAACGTGGCTTTTTCTTGGATGATACAAGTCCTTAAGGTGCTCATGCAATCCTCCCTTCCCTTCGGTAAGATTGACATTGTTATTCCCGGAAGTGGAATTCCAAGGTGGTTCAACAATCAAAATGTGGGTAGTTCAATAAGCATTGATCCATCTTTCGTTGTGCATGACGAAAATTGGATAGGTGTTGCTTGTTGTGCAGCATTTGTGGCACATGATGATCCAATTTATTTGAGTGATAGAATACCACCTGATTATGATCCAACTCTTAGGCTTGGTTTTCAAAATAAATGGGGTGGGATATATCCCCACATTCCGATACATTTTGAGAAAGATCTGGTCACTGTTGAATCTGATCACCTCTTGCTACACTTTTTCACTCGGCAAGAATTCATTGATAGCTATGTAAATTATTTAACAAACAGATCTGATGATCTTGATGGTATCAAATTGGCAACCTCTATTGAGCAGCCCCAAGGTTTGCATTTGGAGGTGAAAAGTTGTGGGTATCGTTGGGTATTTGAGGCGGATCTGGAGCAATTGAACACAAGAATGATGCATGGCAGAAATTCGTCGGTTCGGAAGAGCAAGTTTTTAACAATGGATAGTAGCAGTTCCATTTCGGCTACACTTCCATTGAAGAAATTTTAA 3402 0.3833 MACKSIQCSSSSQMTCKYDVFVSFRGEDTRNNFTDHLFAALHRKNIVAFRDDTKLKKGESIAPELLQAIEGSRIFVVVFSKNYASSTWCLRELAKILDCVQVSEKRVLPIFYDVDPSKVRKQSGSYEKAFVEHEERFKEDLEMMLEMQRWRGALTQVANLSGWDIRDKPQSAEIEKIVKEIISILDLKISSLPKDLFGIGSPIEELENLLHLSSVDDVRVVGISGMGGIGKTTLATVLYDKIAHQYDACCFIDDVSKIYRDYGPIGAAEQLLCQTLNEEHLQICNLYGAANLIRHRLRNVRAFIVLDNVGEVEQLEKLAVNRDWLGAGSRVIIISRDKHILQEYGVDVIYNVQLLNYGNALKLFCAKAFKSDDIMRDYEWMTYDAVRYANGLPLAIKVFGSFLFGRDISEWRSSLARLRENPSKDVMDVLRVSFDGLDDTEKEIFLDIACFFDDQYERYVKEILDFRGFHPEIGIRVLQDKSLITHDHWGRIQMHDLLKELGRSIVREKSPKEPRKWSRLWDYKDLQDVALENKEAENLEAIVMPKYPSYKYRETTMRVDALSKMSHLKLLILWNMNFSGSLTYLSNELGYLCWDKYPFTCLPSNFQPDKLVELKLPNSSIKQLWEGIKVPNLERLTLEGCIKLVQIDPSIGILRKLTDLDLKNCKNLVSIPNNIFYLSSLGTLNLSGCSKLFKNQLLENARHAEHLEKLDLNDSTIQCQSKSSISKILMLPIRVFYSRRQEGSVGLLLPSLPRFPCLYVLDLSFCNLLQIPDSIGGLHCLVHLNLGGNKFVTLPCSIKELSKLKFLNLEHCKQLKYLPELPCLVNLDLSFCNLVQIPDAIWGLHCLERLKLGGNNFVTLPSSIKQLSKLLSLNLEHCKQLKYLPELPPCTVLPERRGYHAGLNIFDCPNLSEMECCHNVAFSWMIQVLKVLMQSSLPFGKIDIVIPGSGIPRWFNNQNVGSSISIDPSFVVHDENWIGVACCAAFVAHDDPIYLSDRIPPDYDPTLRLGFQNKWGGIYPHIPIHFEKDLVTVESDHLLLHFFTRQEFIDSYVNYLTNRSDDLDGIKLATSIEQPQGLHLEVKSCGYRWVFEADLEQLNTRMMHGRNSSVRKSKFLTMDSSSSISATLPLKKF 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2881g00036 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 448 IPR027417 -
Gabi2881g00036 1133 SMART till_3 17 160 IPR000157 GO:0007165
Gabi2881g00036 1133 Pfam Leucine Rich Repeat 610 629 IPR011713 -
Gabi2881g00036 1133 Gene3D - 12 186 IPR035897 -
Gabi2881g00036 1133 Pfam Leucine rich repeat 758 813 IPR001611 GO:0005515
Gabi2881g00036 1133 Gene3D - 355 438 IPR042197 -
Gabi2881g00036 1133 Pfam TIR domain 17 182 IPR000157 GO:0007165
Gabi2881g00036 1133 Gene3D Ribonuclease Inhibitor 739 932 IPR032675 -
Gabi2881g00036 1133 Gene3D Ribonuclease Inhibitor 555 728 IPR032675 -
Gabi2881g00036 1133 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 833 IPR044974 GO:0006952
Gabi2881g00036 1133 PRINTS Disease resistance protein signature 799 815 - -
Gabi2881g00036 1133 PRINTS Disease resistance protein signature 220 235 - -
Gabi2881g00036 1133 PRINTS Disease resistance protein signature 296 310 - -
Gabi2881g00036 1133 PRINTS Disease resistance protein signature 389 403 - -
Gabi2881g00036 1133 Pfam C-JID domain 946 1096 IPR045344 -
Gabi2881g00036 1133 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 163 IPR035897 -
Gabi2881g00036 1133 SUPERFAMILY L domain-like 493 924 - -
Gabi2881g00036 1133 Gene3D - 187 349 IPR027417 -
Gabi2881g00036 1133 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
Gabi2881g00036 1133 Pfam NB-ARC domain 211 423 IPR002182 GO:0043531
Gabi2881g00036 1133 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Gabi2881g00036 1133 SMART LRR_typ_2 844 867 IPR003591 -
Gabi2881g00036 1133 SMART LRR_typ_2 755 777 IPR003591 -
Gabi2881g00036 1133 SMART LRR_typ_2 821 843 IPR003591 -
Gabi2881g00036 1133 SMART LRR_typ_2 778 804 IPR003591 -
Gabi2881g00036 1133 SMART LRR_typ_2 654 678 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2881g00036 Gabi-Chr2881 397374 403190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2881g00036 719 886 WRKY Transcription Factor Family AT4G12020 31.977 3.34e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2881g00036 - - aip:107628789 1079.7