Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2881g00034 ATGGCTTGCAAGAGCATCCAATGCAGTTCTTCATCTCAGATGACGTGCAAATATGATGTGTTTGTTAGCTTCAGAGGAGAAGACACACGTAACAACTTCACTGATCATCTTTTTGCTGCTCTCCATAGAAAAAACATTGTTGCCTTCAGAGATGATACAAAGCTCAAGAAAGGCGAATCCATAGCACCTGAGCTCCTACAAGCAATTGAAGGCTCTCGGATCTTTGTTGTTGTCTTCTCAAAAAACTACGCTTCCTCAACATGGTGCTTGCGTGAACTGGCAAAGATCCTAGATTGCGTTCAAGTATCTGAAAAACGTGTTCTGCCTATTTTTTATGATGTTGATCCGTCTAAGGTTCGAAAACAAAGTGGGAGTTATGAGAAAGCTTTTGTTGAACATGAAGAAAGATTCAAAGAAGATTTAGAGATGATGTTGGAAATGCAAAGATGGAGAGGAGCTCTGACACAAGTGGCCAATCTCTCCGGTTGGGACATACGGGATAAGCCACAAAGTGCAGAGATTGAAAAAATTGTTAAAGAGATAATAAGTATATTGGATCTGAAAATTTCAAGTCTTCCAAAAGATCTATTTGGGATAGGATCTCCGATAGAAGAATTGGAAAATCTTTTACACTTGAGCTCAGTTGATGATGTTCGGGTTGTAGGAATTTCTGGAATGGGGGGAATAGGAAAGACAACTCTTGCTACTGTTTTATATGATAAAATCGCTCATCAATATGATGCTTGCTGTTTTATTGATGATGTAAGCAAAATTTATAGAGATTATGGTCCAATTGGTGCAGCAGAGCAACTTCTATGTCAAACTCTAAATGAAGAGCACCTTCAAATATGTAATCTTTATGGTGCAGCTAATTTGATACGACATAGGCTGCGAAATGTAAGGGCCTTTATAGTTCTTGATAATGTTGGTGAAGTTGAACAACTAGAGAAATTAGCTGTCAATCGTGACTGGTTAGGTGCTGGGAGTAGAGTCATAATAATTTCTAGAGACAAGCATATCTTACAAGAGTATGGAGTGGATGTGATTTATAATGTTCAACTCTTGAATTATGGTAATGCACTTAAATTGTTCTGTGCAAAGGCTTTCAAAAGTGATGATATTATGAGAGATTATGAATGGATGACATATGATGCAGTTCGATATGCTAATGGCCTGCCACTGGCAATTAAAGTATTCGGCTCATTTTTGTTTGGTCGAGATATCTCTGAGTGGAGAAGTTCATTGGCTAGACTGAGAGAAAATCCAAGCAAAGATGTCATGGATGTGTTGCGAGTAAGTTTTGATGGTCTCGATGATACGGAAAAAGAAATATTTTTAGATATTGCTTGTTTCTTTGACGATCAGTATGAGAGATATGTAAAGGAAATCCTAGATTTTCGTGGATTTCATCCAGAAATTGGTATACGAGTTCTCCAAGATAAATCTCTCATAACCCATGATCATTGGGGGAGAATTCAAATGCATGACCTGTTGAAAGAATTGGGCAGGAGTATTGTTCGAGAAAAATCACCTAAAGAGCCAAGAAAGTGGAGCAGGTTGTGGGACTACAAGGATCTTCAAGATGTGGCGTTAGAAAATAAGGAAGCAGAAAATCTTGAAGCCATAGTAATGCCAAAGTATCCTTCATACAAGTATCGAGAAACAACAATGAGGGTGGATGCTCTATCAAAAATGAGTCACCTTAAGTTACTCATACTTTGGAATATGAATTTTTCAGGAAGCCTCACTTATCTATCCAATGAATTAGGATATCTTTGTTGGGATAAATATCCTTTCACGTGTTTGCCATCAAATTTTCAGCCAGATAAACTTGTTGAATTGAAACTGCCAAACAGTAGCATCAAACAACTATGGGAAGGCATAAAGTCTCTACCCAAATTGAGACGGATGGATCTCTCCCACTCCAAAAATCTTACGAAGATGCCGCATTTTGGACAGGTCCCTAATCTTGAGAGGCTGACACTTGAAGGATGTATAAAACTTGTGCAGATCGATCCGTCCATTGGTATTCTAAGAAAGCTTACTGATTTGGATTTGAAAAATTGTAAAAATCTGGTCAGTATTCCCAACAACATTTTTTATCTCAGTTCTCTCGGAACACTAAATCTCTCTGGCTGTTCAAAATTATTTAAGAATCAGCTGTTAGAGAATGCAAGGCATGCAGAACATTTAGAGAAGCTTGATCTGAATGATAGTACTATCCAATGCCAGTCAAAGTCCTCCATCTCTAAAATTCTAATGTTGCCTATCCGTGTTTTCTATTCTCGAAGACAAGAAGGGTCAGTTGGTTTGTTGTTGCCTTCTTTGCCTCGTTTCCCATGTTTGTATGTTCTTGACCTGAGTTTCTGCAATCTACTTCAAATCCCTGATTCCATTGGAGGGTTACATTGTTTAGTACACTTAAATTTGGGGGGAAACAAGTTTGTTACACTACCTTGTAGCATCAAGGAGCTTTCCAAACTTAAATTTTTGAACTTGGAGCACTGTAAGCAGCTTAAATATTTGCCTGAGCTTCCATGTTTGGTGAATCTTGACCTAAGTTTCTGCAATCTAGTTCAAATCCCTGATGCCATTTGGGGGTTACATTGTTTAGAAAGATTAAAATTGGGAGGAAACAATTTTGTTACACTACCTTCTAGCATCAAGCAACTTTCCAAACTTCTATCTTTGAATTTGGAGCATTGTAAGCAGCTGAAATATTTGCCTGAGCTCCCACCATGTACTGTCTTGCCAGAAAGAAGAGGATATCATGCAGGATTAAATATTTTCGATTGCCCCAATCTGAGTGAGATGGAATGCTGTCATAACGTGGCTTTTTCTTGGATGATACAAGTCCTTAAGGTGCTCATGCAATCCTCCCTTCCCTTCGGTAAGATTGACATTGTTATTCCCGGAAGTGGAATTCCAAGGTGGTTCAACAATCAAAATGTGGGTAGTTCAATAAGCATTGATCCATCTTTCGTTGTGCATGACGAAAATTGGATAGGTGTTGCTTGTTGTGCAGCATTTGTGGCACATGATGATCCAATTTATTTGAGTGATAGAATACCACCTGATTATGATCCAACTCTTAGGCTTGGTTTTCAAAATAAATGGGGTGGGATATATCCCCACATTCCGATACATTTTGAGAAAGATCTGGTCACTGTTGAATCTGATCACCTCTTGCTACACTTTTTCACTCGGCAAGAATTCATTGATAGCTATGTAAATTATTTAACAAACAGATCTGATGATCTTGATGGTATCAAATTGGCAACCTCTATTGAGCAGCCCCAAGGTTTGCATTTGGAGGTGAAAAGTTGTGGGTATCGTTGGGTATTTGAGGCGGATCTGGAGCAATTGAACACAAGAATGATGCATGGCAGAAATTCGTCGGTTCGGAAGAGCAAGTTTTTAACAATGGATAGTAGCAGTTCCATTTCGGCTACACTTCCATTGAAGAAATTTTAA 3474 0.3849 MACKSIQCSSSSQMTCKYDVFVSFRGEDTRNNFTDHLFAALHRKNIVAFRDDTKLKKGESIAPELLQAIEGSRIFVVVFSKNYASSTWCLRELAKILDCVQVSEKRVLPIFYDVDPSKVRKQSGSYEKAFVEHEERFKEDLEMMLEMQRWRGALTQVANLSGWDIRDKPQSAEIEKIVKEIISILDLKISSLPKDLFGIGSPIEELENLLHLSSVDDVRVVGISGMGGIGKTTLATVLYDKIAHQYDACCFIDDVSKIYRDYGPIGAAEQLLCQTLNEEHLQICNLYGAANLIRHRLRNVRAFIVLDNVGEVEQLEKLAVNRDWLGAGSRVIIISRDKHILQEYGVDVIYNVQLLNYGNALKLFCAKAFKSDDIMRDYEWMTYDAVRYANGLPLAIKVFGSFLFGRDISEWRSSLARLRENPSKDVMDVLRVSFDGLDDTEKEIFLDIACFFDDQYERYVKEILDFRGFHPEIGIRVLQDKSLITHDHWGRIQMHDLLKELGRSIVREKSPKEPRKWSRLWDYKDLQDVALENKEAENLEAIVMPKYPSYKYRETTMRVDALSKMSHLKLLILWNMNFSGSLTYLSNELGYLCWDKYPFTCLPSNFQPDKLVELKLPNSSIKQLWEGIKSLPKLRRMDLSHSKNLTKMPHFGQVPNLERLTLEGCIKLVQIDPSIGILRKLTDLDLKNCKNLVSIPNNIFYLSSLGTLNLSGCSKLFKNQLLENARHAEHLEKLDLNDSTIQCQSKSSISKILMLPIRVFYSRRQEGSVGLLLPSLPRFPCLYVLDLSFCNLLQIPDSIGGLHCLVHLNLGGNKFVTLPCSIKELSKLKFLNLEHCKQLKYLPELPCLVNLDLSFCNLVQIPDAIWGLHCLERLKLGGNNFVTLPSSIKQLSKLLSLNLEHCKQLKYLPELPPCTVLPERRGYHAGLNIFDCPNLSEMECCHNVAFSWMIQVLKVLMQSSLPFGKIDIVIPGSGIPRWFNNQNVGSSISIDPSFVVHDENWIGVACCAAFVAHDDPIYLSDRIPPDYDPTLRLGFQNKWGGIYPHIPIHFEKDLVTVESDHLLLHFFTRQEFIDSYVNYLTNRSDDLDGIKLATSIEQPQGLHLEVKSCGYRWVFEADLEQLNTRMMHGRNSSVRKSKFLTMDSSSSISATLPLKKF 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2881g00034 1157 Pfam C-JID domain 970 1120 IPR045344 -
Gabi2881g00034 1157 SMART till_3 17 160 IPR000157 GO:0007165
Gabi2881g00034 1157 Gene3D - 187 349 IPR027417 -
Gabi2881g00034 1157 SMART LRR_typ_2 845 867 IPR003591 -
Gabi2881g00034 1157 SMART LRR_typ_2 779 801 IPR003591 -
Gabi2881g00034 1157 SMART LRR_typ_2 802 828 IPR003591 -
Gabi2881g00034 1157 SMART LRR_typ_2 678 702 IPR003591 -
Gabi2881g00034 1157 SMART LRR_typ_2 868 891 IPR003591 -
Gabi2881g00034 1157 Gene3D - 355 438 IPR042197 -
Gabi2881g00034 1157 Pfam TIR domain 17 182 IPR000157 GO:0007165
Gabi2881g00034 1157 PRINTS Disease resistance protein signature 629 645 - -
Gabi2881g00034 1157 PRINTS Disease resistance protein signature 296 310 - -
Gabi2881g00034 1157 PRINTS Disease resistance protein signature 389 403 - -
Gabi2881g00034 1157 PRINTS Disease resistance protein signature 220 235 - -
Gabi2881g00034 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 448 IPR027417 -
Gabi2881g00034 1157 SUPERFAMILY L domain-like 494 948 - -
Gabi2881g00034 1157 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 163 IPR035897 -
Gabi2881g00034 1157 Pfam Leucine rich repeat 782 837 IPR001611 GO:0005515
Gabi2881g00034 1157 Pfam Leucine Rich Repeat 610 629 IPR011713 -
Gabi2881g00034 1157 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 716 IPR044974 GO:0006952
Gabi2881g00034 1157 Gene3D - 12 186 IPR035897 -
Gabi2881g00034 1157 Pfam NB-ARC domain 211 423 IPR002182 GO:0043531
Gabi2881g00034 1157 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
Gabi2881g00034 1157 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Gabi2881g00034 1157 Gene3D Ribonuclease Inhibitor 762 956 IPR032675 -
Gabi2881g00034 1157 Gene3D Ribonuclease Inhibitor 554 725 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2881g00034 Gabi-Chr2881 397374 403190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2881g00034 743 910 WRKY Transcription Factor Family AT4G12020 31.977 3.51e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2881g00034 - - aip:107628789 1110.9