Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2881g00030 ATGGATTGCAAGAAAATCCAAAGCAGCTCATCAACTCGGAAGATATGGAAATATGATGTGTTTGTTAGCTTTAGAGGTGACACACGCAACAATTTCACCGATCATCTTTTTGCTGCTCTCTGTAGAAAAGGCATTTTTACCTTCAGGGATGATACTAATCTCAACAAAGGCGAATCCATTGCACCTGAGCTCCTTAAAGCAATCCAAGGATCCCAGATTTTGATTGTTGTCTTCTCAAAAAACTATGCTTCCTCCACTTGGTGCTTGCAAGAACTCGCAGAGATCGCTGATTGCATTCAAGTGTCAGGACAAACTGTTCTGCCTATTTTCTATGATGTGAATCCATCTGAGGTGAGAAAACAGAGTGGGAGTTTTGAAAAAGCCTTTGTGGAGCATGAACATAGATTCAAAGAAAATTTAGAGAAGGTGCAAAGATGGAGGGGAGCTCTAGCACAAGTGGCCAATCTCTCTGGCTGGGATATAAGTGATAAGCCACAATATGCAGAAATTGAAAAAATTATTAAGAAGGTAAGAGGCATACTGGATCGCAAATTTTCAAGTATACCTGGTGATATAGTTGGGATTCACTCACGTGTGGAAGAATTAGAAAAGCTTTTGGGTTTGGACTCAGATGATGATGCTGTTCGAATAGTAGGGATTTGTGGAATGGGTGGAATCGGAAAGTCTACTCTTGCTACTGTTTTGTATGAGAGAATCTCTAATCAATTTGATGCTTCCTGTTTCGTTGATGATGTAAGTAAAATTTATGGAGATTATGGTCCAATTGGTGCACAAAAGCAACTTTGTCAAATTCTAAATGAAGAAAATCTTCACATGTGCAATACTTTTATGGCAACTAATTTGATAAGAAGTAGGCTTTGCCACGTTAAGTCCCTTATAGTTCTTGATAATATTGATCAAGTTGAACAACTTGAGAAATTGGCAGTGAAACCCGAATGGCTAGGTGCAGGGAGTAGGGTAATCATAATTTCTAGAGATGAACATATCTTGAGAGAGCATGGAGTGGATGAAGTTTACAAAGTTAAACTCTTGAATTATCATAATGCTCTTCAATTGTTCTGTAGAAAAGCTTTCAAATGTGATGATATTATGATAGATTTTGAAAAATTGACATACGATGCAGTAAAATATGTTAATGGCCTACCGTTAGCAATTAAAGTGTTGGGCTCATTTTTGTTTGGTCGAAATGTTTCTGAATGGAGAAGTGCATTGGCTAGATTGAGAGAAAATCCAAGGAAAGATATTATGGATGTGCTACGAAACAGTTTTGATGCATTGGAGGATATGGAAAAGGAAATATTTTTAGATATTGCTTGTTTGTTTTACAACAGGCGTGAGACATATGTGAAGGAAGTTCTAGATTTTCGTGGATTTCATCCTGAAATTGGTATAAGAGTTCTCATTGATAAATCACTAATAACCAGTAAGATGGGGTGGATTCATGTGCATGACTTGTTGATAGAGTTGGGCAGGAGTATTGTTCGAGAAAAATCTCCCAAAGAGCCAAGAAAGTGGAGCAGGTTGTGGAACTACAAGGATCTTCACAATGTTATGTTAGAAAATAAGACAGCAGAAAATCTTGAAGCCCTAGTTACACGGGGATTTCCAGACAAGATTGAAGAAACAACAATGAGGGCTGATGCATTATCAAAAATGAGTCACCTTAAGTTGCTTGTGCTGTGGAGTGTGAACTTTTCAGGAAGCCAAAATTTTCTTTCCAATGAACTAGGATATCTCTGTTGGGATAAATATCCTTTCGCTTCTCTGCCATCAAGTTTTCAGCCGGATAAACTTGTTGAATTGAAACTGCCAAACAGCTGTATCAAACAACTATGGGAATGCACAAAGCCTCTACACAGTTTGAAACGTATGGATCTCTCTCACTCCAGAAATCTTATCAAGATGCCAGATTTTGGAGAGGTCCCAAATCTTGAGTGGCTAAATCTTGAAGGATGTATAAAACTTGAGCGGATTCATCCATCCATTGGCATTCTAAGAAAGCTTTCTTATTTAAATTTGAAAAATTGTAAAAATCTAGTCTTTATTCCCAACATCATTTTTGATCTAAGCTCTCTTGAAGTTCTAAGTCTCTCTGGCTGCTCAAAATTACTTAATAATCAGCTGTTAGAGAAACCAAGGCATGCAGAACATATGGAGAAGCTTGATATAAATGGAAGTACAATACAAAGCCAGTCAACATCCTCCATCTACAAAATTCCAATGTTGCCTTTCCGTTTTTTCTATTCTCGAAGGTATCAACATTCAGTTGGTTTATTGTTGCCTTCTTTGCCTCGTTTCCCATATTTGCAACATCTTGACCTAAGTTTCTGCAATATTCTTCAAATCCCTGATGCAATTGGGTGGTTACATTGTTTAGAATGGTTAAAATTGGGGGGAAACGATTTTGTTACATTACCTTCTAGCATCAAGGAACTTTCCAAACTTAGATATTTTAACTTGGAGCATTGTAAGCAGCTGAAATATTTGCCTGAGCTCCCATCAAGTACTGTCTTTCCAGTGAGACAACCATTATTTAGTAGATATTGTGCAGGATTAAATATTTTTGACTGCCCCAATTTGAGTGAGAGTGAGATGGAACGCTGTTATAACTTGGCTTTTTGTTGGATGATACAAGTCCTTAAGGTGCTCATGCTGTCCTCCATTCCCTTCGGTCATATTCACATTGTTATTCCCGATACCCAAATTCCAAGGTGGTTCAACAAACAAAATATGGGTAATTCAATTAGCATGGATTCATCTCCCATTATGCATGCCAAAAATTGGATAGGTGTCGCTTGTTGTGCAGCATTTGTGGCACATGATGATCAAACTAATTTGAGTGATACAAGCCAACCTCATATTGGGTTCATTAGCCAACCTCAAATTGGGTTCCTTTTTCATAAAAATGGGCGTGGGCGATCTCCCTACATTCCGATACATCTCGAGAAAGATCTGGTCACAGTTGAATCAGATCACCTGATGCTGCTTTTTTTTACTCGGGAAGAATTCATTGATCAATATGTGAAAAATTGTGCATATCGTTGGGTATTTAAGGAGGATCTGGAGCAATCAAATCCAAAAATGATGCATAGCAGAAATTCTTTAGCTCGGAAGCGCAAGTTTTTAACAAATGGTTAG 3159 0.3783 MDCKKIQSSSSTRKIWKYDVFVSFRGDTRNNFTDHLFAALCRKGIFTFRDDTNLNKGESIAPELLKAIQGSQILIVVFSKNYASSTWCLQELAEIADCIQVSGQTVLPIFYDVNPSEVRKQSGSFEKAFVEHEHRFKENLEKVQRWRGALAQVANLSGWDISDKPQYAEIEKIIKKVRGILDRKFSSIPGDIVGIHSRVEELEKLLGLDSDDDAVRIVGICGMGGIGKSTLATVLYERISNQFDASCFVDDVSKIYGDYGPIGAQKQLCQILNEENLHMCNTFMATNLIRSRLCHVKSLIVLDNIDQVEQLEKLAVKPEWLGAGSRVIIISRDEHILREHGVDEVYKVKLLNYHNALQLFCRKAFKCDDIMIDFEKLTYDAVKYVNGLPLAIKVLGSFLFGRNVSEWRSALARLRENPRKDIMDVLRNSFDALEDMEKEIFLDIACLFYNRRETYVKEVLDFRGFHPEIGIRVLIDKSLITSKMGWIHVHDLLIELGRSIVREKSPKEPRKWSRLWNYKDLHNVMLENKTAENLEALVTRGFPDKIEETTMRADALSKMSHLKLLVLWSVNFSGSQNFLSNELGYLCWDKYPFASLPSSFQPDKLVELKLPNSCIKQLWECTKPLHSLKRMDLSHSRNLIKMPDFGEVPNLEWLNLEGCIKLERIHPSIGILRKLSYLNLKNCKNLVFIPNIIFDLSSLEVLSLSGCSKLLNNQLLEKPRHAEHMEKLDINGSTIQSQSTSSIYKIPMLPFRFFYSRRYQHSVGLLLPSLPRFPYLQHLDLSFCNILQIPDAIGWLHCLEWLKLGGNDFVTLPSSIKELSKLRYFNLEHCKQLKYLPELPSSTVFPVRQPLFSRYCAGLNIFDCPNLSESEMERCYNLAFCWMIQVLKVLMLSSIPFGHIHIVIPDTQIPRWFNKQNMGNSISMDSSPIMHAKNWIGVACCAAFVAHDDQTNLSDTSQPHIGFISQPQIGFLFHKNGRGRSPYIPIHLEKDLVTVESDHLMLLFFTREEFIDQYVKNCAYRWVFKEDLEQSNPKMMHSRNSLARKRKFLTNG 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2881g00030 1052 Pfam TIR domain 17 176 IPR000157 GO:0007165
Gabi2881g00030 1052 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 712 IPR044974 GO:0006952
Gabi2881g00030 1052 Gene3D - 183 344 IPR027417 -
Gabi2881g00030 1052 Gene3D Ribonuclease Inhibitor 532 727 IPR032675 -
Gabi2881g00030 1052 Gene3D Ribonuclease Inhibitor 759 920 IPR032675 -
Gabi2881g00030 1052 Pfam NB-ARC domain 208 427 IPR002182 GO:0043531
Gabi2881g00030 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 444 IPR027417 -
Gabi2881g00030 1052 Gene3D - 14 182 IPR035897 -
Gabi2881g00030 1052 PRINTS Disease resistance protein signature 694 710 - -
Gabi2881g00030 1052 PRINTS Disease resistance protein signature 385 399 - -
Gabi2881g00030 1052 PRINTS Disease resistance protein signature 292 306 - -
Gabi2881g00030 1052 PRINTS Disease resistance protein signature 217 232 - -
Gabi2881g00030 1052 SUPERFAMILY L domain-like 490 905 - -
Gabi2881g00030 1052 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Gabi2881g00030 1052 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 183 - -
Gabi2881g00030 1052 Gene3D - 351 434 IPR042197 -
Gabi2881g00030 1052 Pfam Leucine Rich Repeat 604 623 IPR011713 -
Gabi2881g00030 1052 ProSiteProfiles TIR domain profile. 16 181 IPR000157 GO:0007165
Gabi2881g00030 1052 SMART till_3 17 156 IPR000157 GO:0007165
Gabi2881g00030 1052 Pfam C-JID domain 905 1028 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2881g00030 Gabi-Chr2881 356213 360480 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2881g00030 18 822 WRKY Transcription Factor Family AT4G12020 31.039 5.85e-95 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2881g00030 - - psat:127106907 1276.92