Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2881g00028 ATGAGCAGCAACATGAACAATTTCACACCTTTGCCAGGGCCTTGGAGGAGAGGTGTTAGAGCCTATGATGTCCACACTTTCAATAATAGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCAGGCCACTGATGACAGGAGTTCAGGTGAACTAAATCCACTGCGGTTGTGGGAACTCAGAACTCCTTCAGGACTTCACAGTATACCGAATTTTCCAGCACAACCTCATAGCAGACAACAAATTCATGTTCACAATGGTAACATGGGAAGGAGTTTCAACCCCAGGCACAGAGAGATTTTCCCGAGGTCACCTCCAAGATCCACAGTCCAAACATGCACACAAGTTCCCCCAGTGGTAGAAAACTCCAAATCAACAGCTTTGAGGAAGCTTAAGAAAGAAGTCTATAACCCTATCCCAAAATGGTTGGCTAAGAAAGTGAGCTTATATTATAGAGATAATGCTGTAGATGATTTGAAAGAGAGATTGAAAGAAAAGGATGAAGATGGTAAAAGGTGTGCTATTTGCTTGGATGATTTTAAGCCCAAAGAAGAGGTTATGGTCACTCCGTGTAACCACATGTTTCATGAGGATTGCATAGTACCTTGGTTAACAAGCAAAGGTCAGTGCCCAGTTTGTAGGTTTGTGATTTATGAGAGCAATGACATTGCCAATTTGGAACCAAGTGACATGGTTGCTGGTGAGCTTTTGTCAATTTTGAGAGCCATGGAAGAAGCTTTTCAATTGGGCAGTGTAACTCATATGTACACATAA 783 0.4227 MSSNMNNFTPLPGPWRRGVRAYDVHTFNNSESNEVPVFYRSHSTQATDDRSSGELNPLRLWELRTPSGLHSIPNFPAQPHSRQQIHVHNGNMGRSFNPRHREIFPRSPPRSTVQTCTQVPPVVENSKSTALRKLKKEVYNPIPKWLAKKVSLYYRDNAVDDLKERLKEKDEDGKRCAICLDDFKPKEEVMVTPCNHMFHEDCIVPWLTSKGQCPVCRFVIYESNDIANLEPSDMVAGELLSILRAMEEAFQLGSVTHMYT 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2881g00028 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 231 IPR013083 -
Gabi2881g00028 260 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Gabi2881g00028 260 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 78 218 - -
Gabi2881g00028 260 SMART ring_2 176 216 IPR001841 -
Gabi2881g00028 260 Pfam Ring finger domain 175 217 IPR001841 -
Gabi2881g00028 260 SMART ringv_2 175 217 IPR011016 GO:0008270
Gabi2881g00028 260 FunFam RING/U-box superfamily protein 160 233 - -
Gabi2881g00028 260 SUPERFAMILY RING/U-box 167 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2881g00028 Gabi-Chr2881 314939 316945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2881g00028 80 254 C3H Transcription Factor Family AT3G58720 42.188 3.72e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2881g00028 - - gmx:100810607 353.984