Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2881g00027 ATGAGCAGCAACATGAACAATTTCACACCTTTGCCAGGGCCTTGGAGGAGAGGTGTTAGAGCCTATGATGTCCACACTTTCAATAATAGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCAGGCCACTCAGGATGACAGGAGTTCAGGTGAACTAAATCCACTGCGGTTGTGGGAACTCAGAACTCCTTCAGGACTTCACAGTATACCGAATTTTCCAGCACAACCTCATAGCAGACAACAAATTCATGTTCACAATGGTAACATGGGAAGGAGTTTCAACCCCAGGCACAGAGAGATTTTCCCGAGGTCACCTCCAAGATCCACAGTCCAAACATGCACACAAGTTCCCCCAGTGGTAGAAAACTCCAAATCAACAGCTTTGAGGAAGCTTAAGAAAGAAGTCTATAACCCTATCCCAAAATGGTTGGCTAAGAAAGTGAGCTTATATTATAGAGATAATGCTGTAGATGATTTGAAAGAGAGATTGAAAGAAAAGGATGAAGATGGTAAAAGGTGTGCTATTTGCTTGGATGATTTTAAGCCCAAAGAAGAGGTTATGGTCACTCCGTGTAACCACATGTTTCATGAGGATTGCATAGTACCTTGGTTAACAAGCAAAGGTCAGTGCCCAGTTTGTAGGTTTGTGATTTATGAGAGCAATGACATTGCCAATTTGGAACCAAGTGACATGGTTGCTGGTGAGCTTTTGTCAATTTTGAGAGCCATGGAAGAAGCTTTTCAATTGGGCAGTGTAACTCATATGTACACATAA 786 0.4237 MSSNMNNFTPLPGPWRRGVRAYDVHTFNNSESNEVPVFYRSHSTQATQDDRSSGELNPLRLWELRTPSGLHSIPNFPAQPHSRQQIHVHNGNMGRSFNPRHREIFPRSPPRSTVQTCTQVPPVVENSKSTALRKLKKEVYNPIPKWLAKKVSLYYRDNAVDDLKERLKEKDEDGKRCAICLDDFKPKEEVMVTPCNHMFHEDCIVPWLTSKGQCPVCRFVIYESNDIANLEPSDMVAGELLSILRAMEEAFQLGSVTHMYT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2881g00027 261 SMART ring_2 177 217 IPR001841 -
Gabi2881g00027 261 Pfam Ring finger domain 176 218 IPR001841 -
Gabi2881g00027 261 FunFam RING/U-box superfamily protein 161 234 - -
Gabi2881g00027 261 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Gabi2881g00027 261 SMART ringv_2 176 218 IPR011016 GO:0008270
Gabi2881g00027 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 232 IPR013083 -
Gabi2881g00027 261 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 78 219 - -
Gabi2881g00027 261 SUPERFAMILY RING/U-box 168 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2881g00027 Gabi-Chr2881 314939 316946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2881g00027 81 255 C3H Transcription Factor Family AT3G58720 42.188 4.00e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2881g00027 - - gmx:100810607 349.362