Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2881g00020 ATGACAGAATCTGAGGAAGGAAATCCAGACTTTCCTCTCAAGTCAAAGCCACCAGAGGAACCTGGGTGCGCCATGGATTTTGATCTGGACCTTGAAAGTTCATGGTGCTTAGATAATTTGTCCTTTGTCTCCGAACCCTTGTCACCTTTTCTGTTCTCCAACCCCTCTGACCAACCTTCCTCTCCTCCTCTATGGTTTTTTTCTGATGGTGAAGATGATAGGCATGCCAGGCTTGCAGCTTCAGCCTTCTCTGATTGCAACAAGATCTTCTCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGTGGAGAATGATGACAACAAAAAACTTTTGCCACCCCTTGTGCCACCTTTAGAAAATTTGGATGGGTATTGTGCAATCAAGGAAAGGATGGCACAAGCGCTTCGCTACTTCAAAGAGTTGACTGAACAGAATGTTCTGGCACAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAATATAGAACCGTCTCTCTGACGTACATGTTTTCTGTGGATGGGGAGAATGATGCAACTCTGGGACTTCCTGGTCGGGTTTTTCAGCACAAATTACCAGAATGGACTCCTAATGTTCAGTATTATACTAATAAAGAATATCCACGCCGAGATCATGCTCAAAATTACAATGTTCGTGGATCCTTGGCTTTGCCTGTGTTTGAACGTTCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACAGAAGATAAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAACATTCATACACTCAGATTTGTAATGAAGGCCGCCAGAATGCATTATCAGAGATCTTGGAGATATTGACAATGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATCGGATTGTTTTGGCCCAAGGTGGTGGTCTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGACATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTTCATGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCATAGCATGTGCTTCTGCAGAAACATTACCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTACGAAGCTCGCATACCGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGGATCACAGACTTTGATGAACAAAAGACTTTTTTGGGATCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTAAGGAGGATGGTTCAATTGAAATTATTGAAGCAGAAAATGAAAGAGTTAATCTGAGGCTTGAATCTATTCCAATTGCCCAATCTATTAAATCACCGCCTAGGCCTGATGTCTCACCAAATATAGGGGAGGAAGTGCCACTGGATCTATCAGAACAGCAAATAATGATGTACTGTAATGACATAGATGATGGAAGGAGTCTTGATGACAATGCAGGTGGAAACATTGATCAAATGTCCTCCTTAGACACTAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTCGAAGTTTTGCAACGTTATTTCGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCGCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCTTGTCCAAGCTCAAGCGTGTTATGGAATCTGTCCAAGGTGCAGAAGGAGCATTTGATTTGAATTCTCTCAGAACAAGTCCACTTCCCATTGCTGTTGGTTCCATTCCTGAGCCTTCTACTTCAAATAAGTTCAGCCAGCAAGCCTCACTAAGCATTGGGCCATCAGAGCCTCAGTTGAAAGAGAATGAATTGGAGGCCTATAAAATATTAGAAACAAATAGACAGGCTGGAATGGAAGATCAATTTCTAGGAGGAAGGACACAAAGTGTTGAGAAAGTAATACATGATAAATGTGTTTCTACTTGGGAAGTTGAAAAAGATCCAAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAAGATAGTACAATTCCTACTTCTCATGGTTCTTGCCAAGGTAGTCCCCTAAATGAAAGTTCACCCGTAAAAGATATATTCATTACATCCATCAATGAGCAATGTGCTGTGCTAAGGGGATCACCAGAATCAACACTGCAGCCAACTAATGCACTGAACTGTTCAACTGCTTACCCTATGCCTGAGATTGTAGCAACAGAACTTGAAGAGCCATTTGGAGGAATGCTTGTAGAGGATGCTGGTAGTTCTAAAGACTTGAGAAATTTGTGCCCTTCAGTAGCAGAGGCCATTTTGGAGGATCTGGTTCCAGAAGCTTGTGGGACTAATCCTTCAGCTTCTGATTTGGCTCCTAAGCAATGCATGAATACTCTTGATAAAACAGTGACACCTTTTGCAGCTAGGAAAGAAATGAAGAATGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTCGGGTCTCTTTGACCTGTGGGATTGTGGAATTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATCAAGTACCTGGATGATGATCAAGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAAGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTGTTGGTGCATGACATAACTTACAATCTTGGAAGCTCCTGTGAGAGCTCGGGAGGGTGA 2973 0.4198 MTESEEGNPDFPLKSKPPEEPGCAMDFDLDLESSWCLDNLSFVSEPLSPFLFSNPSDQPSSPPLWFFSDGEDDRHARLAASAFSDCNKIFSCDSNSIAEKPVENDDNKKLLPPLVPPLENLDGYCAIKERMAQALRYFKELTEQNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLTYMFSVDGENDATLGLPGRVFQHKLPEWTPNVQYYTNKEYPRRDHAQNYNVRGSLALPVFERSLQSCVGVLELIMTSQKINYAPEVDKICKALEAVNLRSSEILEHSYTQICNEGRQNALSEILEILTMVCETHNLPLAQTWVPCRHRIVLAQGGGLKKSCSSFDGSCMGQVCMSTTDIAFYIIDAHLWGFHEACVEHHLQQGQGVAGRAFLSHSMCFCRNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPRITDFDEQKTFLGSILATMKQHFQSLKIAAGVELKEDGSIEIIEAENERVNLRLESIPIAQSIKSPPRPDVSPNIGEEVPLDLSEQQIMMYCNDIDDGRSLDDNAGGNIDQMSSLDTKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVMESVQGAEGAFDLNSLRTSPLPIAVGSIPEPSTSNKFSQQASLSIGPSEPQLKENELEAYKILETNRQAGMEDQFLGGRTQSVEKVIHDKCVSTWEVEKDPKRTRTGSGSSEDSTIPTSHGSCQGSPLNESSPVKDIFITSINEQCAVLRGSPESTLQPTNALNCSTAYPMPEIVATELEEPFGGMLVEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPSASDLAPKQCMNTLDKTVTPFAARKEMKNVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDQEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITYNLGSSCESSGG 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2881g00020 990 SMART PB1_new 895 977 IPR000270 GO:0005515
Gabi2881g00020 990 Gene3D - 892 976 - -
Gabi2881g00020 990 MobiDBLite consensus disorder prediction 753 774 - -
Gabi2881g00020 990 CDD PB1_NLP 896 976 IPR034891 -
Gabi2881g00020 990 Pfam RWP-RK domain 587 635 IPR003035 -
Gabi2881g00020 990 Pfam PB1 domain 896 976 IPR000270 GO:0005515
Gabi2881g00020 990 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2881g00020 990 FunFam RWP-RK domain-containing protein 892 976 - -
Gabi2881g00020 990 ProSiteProfiles PB1 domain profile. 895 977 IPR000270 GO:0005515
Gabi2881g00020 990 SUPERFAMILY CAD & PB1 domains 893 978 - -
Gabi2881g00020 990 PANTHER PROTEIN NLP8 58 989 IPR045012 GO:0003700
Gabi2881g00020 990 ProSiteProfiles RWP-RK domain profile. 574 655 IPR003035 -
Gabi2881g00020 990 MobiDBLite consensus disorder prediction 743 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2881g00020 Gabi-Chr2881 228823 233551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2881g00020 261 989 NLP Transcription Factor Family AT4G24020 51.867 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi2881g00020 PB1 3.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2881g00020 - - gmx:100786118 1631.31