Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2881g00019 ATGACAGAATCTGAGGAAGGAAATCCAGACTTTCCTCTCAAGTCAAAGCCACCAGAGGAACCTGGGTGCGCCATGGATTTTGATCTGGACCTTGAAAGTTCATGGTGCTTAGATAATTTGTCCTTTGTCTCCGAACCCTTGTCACCTTTTCTGTTCTCCAACCCCTCTGACCAACCTTCCTCTCCTCCTCTATGGTTTTTTTCTGATGGTGAAGATGATAGGCATGCCAGGCTTGCAGCTTCAGCCTTCTCTGATTGCAACAAGATCTTCTCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGTGGAGAATGATGACAACAAAAAACTTTTGCCACCCCTTGTGCCACCTTTAGAAAATTTGGATGGGTATTGTGCAATCAAGGAAAGGATGGCACAAGCGCTTCGCTACTTCAAAGAGTTGACTGAACAGAATGTTCTGGCACAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAATATAGAACCGTCTCTCTGACGTACATGTTTTCTGTGGATGGGGAGAATGATGCAACTCTGGGACTTCCTGGTCGGGTTTTTCAGCACAAATTACCAGAATGGACTCCTAATGTTCAGTATTATACTAATAAAGAATATCCACGCCGAGATCATGCTCAAAATTACAATGTTCGTGGATCCTTGGCTTTGCCTGTGTTTGAACGTTCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACAGAAGATAAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAACATTCATACACTCAGATTTTAAACCAGATTTGTAATGAAGGCCGCCAGAATGCATTATCAGAGATCTTGGAGATATTGACAATGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATCGGATTGTTTTGGCCCAAGGTGGTGGTCTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGACATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTTCATGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCATAGCATGTGCTTCTGCAGAAACATTACCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTACGAAGCTCGCATACCGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGGATCACAGACTTTGATGAACAAAAGACTTTTTTGGGATCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTAAGGAGGATGGTTCAATTGAAATTATTGAAGCAGAAAATGAAAGAGTTAATCTGAGGCTTGAATCTATTCCAATTGCCCAATCTATTAAATCACCGCCTAGGCCTGATGTCTCACCAAATATAGGGGAGGAAGTGCCACTGGATCTATCAGAACAGCAAATAATGATGTACTGTAATGACATAGATGATGGAAGGAGTCTTGATGACAATGCAGGTGGAAACATTGATCAAATGTCCTCCTTAGACACTAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTCGAAGTTTTGCAACGTTATTTCGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCGCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCTTGTCCAAGCTCAAGCGTGTTATGGAATCTGTCCAAGGTGCAGAAGGAGCATTTGATTTGAATTCTCTCAGAACAAGTCCACTTCCCATTGCTGTTGGTTCCATTCCTGAGCCTTCTACTTCAAATAAGTTCAGCCAGCAAGCCTCACTAAGCATTGGGCCATCAGAGCCTCAGTTGAAAGAGAATGAATTGGAGGCCTATAAAATATTAGAAACAAATAGACAGGCTGGAATGGAAGATCAATTTCTAGGAGGAAGGACACAAAGTGTTGAGAAAGTAATACATGATAAATGTGTTTCTACTTGGGAAGTTGAAAAAGATCCAAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAAGATAGTACAATTCCTACTTCTCATGGTTCTTGCCAAGGTAGTCCCCTAAATGAAAGTTCACCCGTAAAAGATATATTCATTACATCCATCAATGAGCAATGTGCTGTGCTAAGGGGATCACCAGAATCAACACTGCAGCCAACTAATGCACTGAACTGTTCAACTGCTTACCCTATGCCTGAGATTGTAGCAACAGAACTTGAAGAGCCATTTGGAGGAATGCTTGTAGAGGATGCTGGTAGTTCTAAAGACTTGAGAAATTTGTGCCCTTCAGTAGCAGAGGCCATTTTGGAGGATCTGGTTCCAGAAGCTTGTGGGACTAATCCTTCAGCTTCTGATTTGGCTCCTAAGCAATGCATGAATACTCTTGATAAAACAGTGACACCTTTTGCAGCTAGGAAAGAAATGAAGAATGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTCGGGTCTCTTTGACCTGTGGGATTGTGGAATTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATCAAGTACCTGGATGATGATCAAGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAAGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTGTTGGTGCATGACATAACTTACAATCTTGGAAGCTCCTGTGAGAGCTCGGGAGGGTGA 2985 0.4191 MTESEEGNPDFPLKSKPPEEPGCAMDFDLDLESSWCLDNLSFVSEPLSPFLFSNPSDQPSSPPLWFFSDGEDDRHARLAASAFSDCNKIFSCDSNSIAEKPVENDDNKKLLPPLVPPLENLDGYCAIKERMAQALRYFKELTEQNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLTYMFSVDGENDATLGLPGRVFQHKLPEWTPNVQYYTNKEYPRRDHAQNYNVRGSLALPVFERSLQSCVGVLELIMTSQKINYAPEVDKICKALEAVNLRSSEILEHSYTQILNQICNEGRQNALSEILEILTMVCETHNLPLAQTWVPCRHRIVLAQGGGLKKSCSSFDGSCMGQVCMSTTDIAFYIIDAHLWGFHEACVEHHLQQGQGVAGRAFLSHSMCFCRNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPRITDFDEQKTFLGSILATMKQHFQSLKIAAGVELKEDGSIEIIEAENERVNLRLESIPIAQSIKSPPRPDVSPNIGEEVPLDLSEQQIMMYCNDIDDGRSLDDNAGGNIDQMSSLDTKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVMESVQGAEGAFDLNSLRTSPLPIAVGSIPEPSTSNKFSQQASLSIGPSEPQLKENELEAYKILETNRQAGMEDQFLGGRTQSVEKVIHDKCVSTWEVEKDPKRTRTGSGSSEDSTIPTSHGSCQGSPLNESSPVKDIFITSINEQCAVLRGSPESTLQPTNALNCSTAYPMPEIVATELEEPFGGMLVEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPSASDLAPKQCMNTLDKTVTPFAARKEMKNVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDQEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITYNLGSSCESSGG 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2881g00019 994 PANTHER PROTEIN NLP8 58 993 IPR045012 GO:0003700
Gabi2881g00019 994 MobiDBLite consensus disorder prediction 757 778 - -
Gabi2881g00019 994 Pfam PB1 domain 900 980 IPR000270 GO:0005515
Gabi2881g00019 994 FunFam RWP-RK domain-containing protein 896 980 - -
Gabi2881g00019 994 ProSiteProfiles PB1 domain profile. 899 981 IPR000270 GO:0005515
Gabi2881g00019 994 CDD PB1_NLP 900 980 IPR034891 -
Gabi2881g00019 994 ProSiteProfiles RWP-RK domain profile. 578 659 IPR003035 -
Gabi2881g00019 994 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2881g00019 994 SUPERFAMILY CAD & PB1 domains 897 982 - -
Gabi2881g00019 994 SMART PB1_new 899 981 IPR000270 GO:0005515
Gabi2881g00019 994 MobiDBLite consensus disorder prediction 747 778 - -
Gabi2881g00019 994 Pfam RWP-RK domain 591 639 IPR003035 -
Gabi2881g00019 994 Gene3D - 896 980 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2881g00019 Gabi-Chr2881 228823 233552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2881g00019 261 993 NLP Transcription Factor Family AT4G24020 51.592 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi2881g00019 PB1 3.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2881g00019 - - gmx:100786118 1625.53