Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2881g00018 ATGACAGAATCTGAGGAAGGAAATCCAGACTTTCCTCTCAAGTCAAAGCCACCAGAGGAACCTGGGTGCGCCATGGATTTTGATCTGGACCTTGAAAGTTCATGGTGCTTAGATAATTTGTCCTTTGTCTCCGAACCCTTGTCACCTTTTCTGTTCTCCAACCCCTCTGACCAACCTTCCTCTCCTCCTCTATGGTTTTTTTCTGATGGTGAAGATGATAGGCATGCCAGGCTTGCAGCTTCAGCCTTCTCTGATTGCAACAAGATCTTCTCTTCTGAAAAGCCAGTGGAGAATGATGACAACAAAAAACTTTTGCCACCCCTTGTGCCACCTTTAGAAAATTTGGATGGGTATTGTGCAATCAAGGAAAGGATGGCACAAGCGCTTCGCTACTTCAAAGAGTTGACTGAACAGAATGTTCTGGCACAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAATATAGAACCGTCTCTCTGACGTACATGTTTTCTGTGGATGGGGAGAATGATGCAACTCTGGGACTTCCTGGTCGGGTTTTTCAGCACAAATTACCAGAATGGACTCCTAATGTTCAGTATTATACTAATAAAGAATATCCACGCCGAGATCATGCTCAAAATTACAATGTTCGTGGATCCTTGGCTTTGCCTGTGTTTGAACGTTCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACAGAAGATAAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAACATTCATACACTCAGATTTGTAATGAAGGCCGCCAGAATGCATTATCAGAGATCTTGGAGATATTGACAATGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATCGGATTGTTTTGGCCCAAGGTGGTGGTCTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGACATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTTCATGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCATAGCATGTGCTTCTGCAGAAACATTACCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTACGAAGCTCGCATACCGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGGATCACAGACTTTGATGAACAAAAGACTTTTTTGGGATCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTAAGGAGGATGGTTCAATTGAAATTATTGAAGCAGAAAATGAAAGAGTTAATCTGAGGCTTGAATCTATTCCAATTGCCCAATCTATTAAATCACCGCCTAGGCCTGATGTCTCACCAAATATAGGGGAGGAAGTGCCACTGGATCTATCAGAACAGCAAATAATGATGTACTGTAATGACATAGATGATGGAAGGAGTCTTGATGACAATGCAGGTGGAAACATTGATCAAATGTCCTCCTTAGACACTAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTCGAAGTTTTGCAACGTTATTTCGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCGCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCTTGTCCAAGCTCAAGCGTGTTATGGAATCTGTCCAAGGTGCAGAAGGAGCATTTGATTTGAATTCTCTCAGAACAAGTCCACTTCCCATTGCTGTTGGTTCCATTCCTGAGCCTTCTACTTCAAATAAGTTCAGCCAGCAAGCCTCACTAAGCATTGGGCCATCAGAGCCTCAGTTGAAAGAGAATGAATTGGAGGCCTATAAAATATTAGAAACAAATAGACAGGCTGGAATGGAAGATCAATTTCTAGGAGGAAGGACACAAAGTGTTGAGAAAGTAATACATGATAAATGTGTTTCTACTTGGGAAGTTGAAAAAGATCCAAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAAGATAGTACAATTCCTACTTCTCATGGTTCTTGCCAAGGTAGTCCCCTAAATGAAAGTTCACCCGTAAAAGATATATTCATTACATCCATCAATGAGCAATGTGCTGTGCTAAGGGGATCACCAGAATCAACACTGCAGCCAACTAATGCACTGAACTGTTCAACTGCTTACCCTATGCCTGAGATTGTAGCAACAGAACTTGAAGAGCCATTTGGAGGAATGCTTGTAGAGGATGCTGGTAGTTCTAAAGACTTGAGAAATTTGTGCCCTTCAGTAGCAGAGGCCATTTTGGAGGATCTGGTTCCAGAAGCTTGTGGGACTAATCCTTCAGCTTCTGATTTGGCTCCTAAGCAATGCATGAATACTCTTGATAAAACAGTGACACCTTTTGCAGCTAGGAAAGAAATGAAGAATGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTCGGGTCTCTTTGACCTGTGGGATTGTGGAATTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATCAAGTACCTGGATGATGATCAAGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAAGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTGTTGGTGCATGACATAACTTACAATCTTGGAAGCTCCTGTGAGAGCTCGGGAGGGTGA 2955 0.4206 MTESEEGNPDFPLKSKPPEEPGCAMDFDLDLESSWCLDNLSFVSEPLSPFLFSNPSDQPSSPPLWFFSDGEDDRHARLAASAFSDCNKIFSSEKPVENDDNKKLLPPLVPPLENLDGYCAIKERMAQALRYFKELTEQNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLTYMFSVDGENDATLGLPGRVFQHKLPEWTPNVQYYTNKEYPRRDHAQNYNVRGSLALPVFERSLQSCVGVLELIMTSQKINYAPEVDKICKALEAVNLRSSEILEHSYTQICNEGRQNALSEILEILTMVCETHNLPLAQTWVPCRHRIVLAQGGGLKKSCSSFDGSCMGQVCMSTTDIAFYIIDAHLWGFHEACVEHHLQQGQGVAGRAFLSHSMCFCRNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPRITDFDEQKTFLGSILATMKQHFQSLKIAAGVELKEDGSIEIIEAENERVNLRLESIPIAQSIKSPPRPDVSPNIGEEVPLDLSEQQIMMYCNDIDDGRSLDDNAGGNIDQMSSLDTKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVMESVQGAEGAFDLNSLRTSPLPIAVGSIPEPSTSNKFSQQASLSIGPSEPQLKENELEAYKILETNRQAGMEDQFLGGRTQSVEKVIHDKCVSTWEVEKDPKRTRTGSGSSEDSTIPTSHGSCQGSPLNESSPVKDIFITSINEQCAVLRGSPESTLQPTNALNCSTAYPMPEIVATELEEPFGGMLVEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPSASDLAPKQCMNTLDKTVTPFAARKEMKNVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDQEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITYNLGSSCESSGG 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2881g00018 984 MobiDBLite consensus disorder prediction 737 768 - -
Gabi2881g00018 984 ProSiteProfiles RWP-RK domain profile. 568 649 IPR003035 -
Gabi2881g00018 984 Gene3D - 886 970 - -
Gabi2881g00018 984 FunFam RWP-RK domain-containing protein 886 970 - -
Gabi2881g00018 984 Pfam PB1 domain 890 970 IPR000270 GO:0005515
Gabi2881g00018 984 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2881g00018 984 SMART PB1_new 889 971 IPR000270 GO:0005515
Gabi2881g00018 984 SUPERFAMILY CAD & PB1 domains 887 972 - -
Gabi2881g00018 984 PANTHER PROTEIN NLP8 60 983 IPR045012 GO:0003700
Gabi2881g00018 984 MobiDBLite consensus disorder prediction 747 768 - -
Gabi2881g00018 984 Pfam RWP-RK domain 581 629 IPR003035 -
Gabi2881g00018 984 ProSiteProfiles PB1 domain profile. 889 971 IPR000270 GO:0005515
Gabi2881g00018 984 CDD PB1_NLP 890 970 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2881g00018 Gabi-Chr2881 228822 233552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2881g00018 255 983 NLP Transcription Factor Family AT4G24020 51.867 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi2881g00018 PB1 3.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2881g00018 - - gmx:100786118 1610.89