Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00043 ATGGCTGATGAAGAACGAGAACCAACCACCGCCGGTCCCCGTCTCCGGCGAGCCGTTGAGCTCATCTCTTCCTTGATATCCCTTTCTCTTTTGATCAGGGTCTTCGCCGGAAAATGGCAACTGATTCGGAACAAGCTGGAGGAGCTTCATTCGGGACTTATCGCCGGCGAGAACCAATCATCAACACTCTCCGGCGAGTTCCCGGCGATAATGGGCACCGTGGAGGAGTGCCATGACCTCGCTCGGCGGTGCTTGGATCTGTCTTACAGTGGGAAGCTGCTGATGCAGAGCGATTTGGACGTGACGTTGGGGAAGTTGGAGGTGCACGTGAAGAAGGTTTCGGATATATACAAGAAGGGTTTTCTGACGCATAGGTACGCTGTGGTTGTTTCAAGGCCTGGTCTTGGAGCTTGCAAAGAAGACATGAGGTTCTACATAAGGGACTTGTTCACAAGGATGAAGGTTGGTGATTTGGGTATGAAGAAGCAGGCTTTGATTAACCTGCATGAGGTTGTAGTGGAAGATGACAAGTATGTGAAGTTGGTTGTCGAAGTTGGTGACTTTGTTCATGTGTTGGTCGATTTTCTTGCTTCCCCAGAGATTGAGATTCTGGAAGAATCTGCCAAGGTGGTTTCTGTGATTTCGGGCTTTGATTCCTATAAAGGGGTTTTGATTGGTGCTGGGGTTATTGGCCCCTTGATTCGGGTTTTGGAATGTGGGAGTGAGTCAGGGAAGGTAGGGGCTGTTAGGTGTTTGCTCAAGTTGACTGAGAATTCGGATAATGTTTGGTCTGTTTCGGCTCATGGGGGTGTCACGGCCTTGTTGAAGATTTGTGACAGTGTGGATTGTAAAGGGGAATTGGTTGGTCCTGTTTGTGGGGTGTTGAGGAATCTTGGTGGTGTTGAAGAGATAAAGAGGTTTATGGTTGAAGAGGGTGTGGTTTCAACGTTTATAAGGCTTGCGAGATCCAAGGATGAAGCAATTCAGGTAAGTTCTGTAGAGTTCATTCAAAGCATTGCCTCTGGAGATGAATCGGTTAGGCAGATGGTGATTAGAGAAGGTGGGATTCGTGTTTTGTTATGTCTTTTGGATCCTAAATGGACGTATTCATCTAAAACCAGGGAGGTGGTAATGAGAGCTATTGAAAATTTGAGTTTTCCTTCATCTAGTTCTGTAAGTATTTTGTTGAGTTATGGCTTTGTGGATCAACTGCTATATTATGTTCGAAATGGGGAGGTTTCAATTCAAGAGTTGGCGCTCAAAGTGGCATTTAGACTCTGTGGAACATCAGAGGAGGCTAAGAAAGCATTGGGTGATGCGGGCTTCATGGCAGAGCTTGTTAGGTTTCTAAATGCAAAATCATTTGAAGTTCGTGAAATGGCAGCCGAGGCACTCTCTGGTATGGTTATGGTATCAAAAAATAGAAAGAAATTTGTGCAGGATGACCATAATATTGCTCTTCTTCTGCAACGGCTAGACCCAAAGGAGGGAAATCCAGGTAATAAAAAGTTCTTAATCTCTATCTTAATGTCATTAACAAGTTGCAACAGTGGGAGGAAAAAGATTGTCAGTTCTGGGTATGTCAAAAGCATAGAGAAACTTGCAGAAGCTGAAGTTTCTTCTGATGCCAAGAGACTTGTGAGGAAGTTATCCACAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1698 0.4541 MADEEREPTTAGPRLRRAVELISSLISLSLLIRVFAGKWQLIRNKLEELHSGLIAGENQSSTLSGEFPAIMGTVEECHDLARRCLDLSYSGKLLMQSDLDVTLGKLEVHVKKVSDIYKKGFLTHRYAVVVSRPGLGACKEDMRFYIRDLFTRMKVGDLGMKKQALINLHEVVVEDDKYVKLVVEVGDFVHVLVDFLASPEIEILEESAKVVSVISGFDSYKGVLIGAGVIGPLIRVLECGSESGKVGAVRCLLKLTENSDNVWSVSAHGGVTALLKICDSVDCKGELVGPVCGVLRNLGGVEEIKRFMVEEGVVSTFIRLARSKDEAIQVSSVEFIQSIASGDESVRQMVIREGGIRVLLCLLDPKWTYSSKTREVVMRAIENLSFPSSSSVSILLSYGFVDQLLYYVRNGEVSIQELALKVAFRLCGTSEEAKKALGDAGFMAELVRFLNAKSFEVREMAAEALSGMVMVSKNRKKFVQDDHNIALLLQRLDPKEGNPGNKKFLISILMSLTSCNSGRKKIVSSGYVKSIEKLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00043 565 SMART arm_5 301 341 IPR000225 GO:0005515
Gabi2880g00043 565 SMART arm_5 430 470 IPR000225 GO:0005515
Gabi2880g00043 565 SMART arm_5 343 386 IPR000225 GO:0005515
Gabi2880g00043 565 SMART arm_5 217 257 IPR000225 GO:0005515
Gabi2880g00043 565 SMART arm_5 258 300 IPR000225 GO:0005515
Gabi2880g00043 565 SMART arm_5 175 216 IPR000225 GO:0005515
Gabi2880g00043 565 Gene3D - 145 554 IPR011989 -
Gabi2880g00043 565 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 269 313 IPR000225 GO:0005515
Gabi2880g00043 565 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 564 - -
Gabi2880g00043 565 SUPERFAMILY ARM repeat 138 536 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00043 Gabi-Chr2880 371778 373801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00043 146 419 U-box Gene Family AT2G23140 24.460 1.69e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00043 - - gmx:100783537 884.404