Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00038 ATGGGGAGAGCACCTTGTTGTGACAAGAATGGCCTCAAGAAAGGGCCATGGACAACCGAGGAGGACCAGAAACTCATTGATTACATTCAGAAACATGGATGTGGCAACTGGAGGACACTCCCACAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGGTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAGGAGACAATAATTCAGCTGCATAGCATTATTGGCAACAAGTGGTCTGCGATTGCATCTCGCTTACCAGGAAGAACAGACAATGAAATCAAAAACTATTGGAACACCCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGATCCTGTGACACACAGTCCACGACTTAACCTATTGGACCTATCTTCCATTCTAAGCTCATCTCTCTATGGTTCATCACAAATCAACATCCAAAGGCTCCTTGGCATGCAGTCTTTGGTGAATCCAGAGCTTCTAAAGTTGGCTTCCTCACTCATCTCCTCACAGCAAAATGATCAACAGAACCAACTCTGCAATCCCCAAATTCAGAATCCAATTCCACACTATGCCCAATTTCATCAAGACCCACTTCAACAAACAGCAGGTTCCACAACATTGAGTGACCCTTCCGCTTCATTAATGCCTCTAACGCAACCACAATTAATGGTTGAACCCAATGCGGAGGAGCCATATCCTTCTAGTTTCACCGACTTTAGTTACCAACACCATTTTCAGCCAAGTGATTGGCACAAAAATGGAATTGATTTAAGCACCTTATTAACAGATGACTATATCCCTCAGTTATCAAGCTATAATAATAATTTTTATGATTCTGATAATCAAAATCTCATGTATCCTCCATTGTCCGAAACTTCAACCTTCCATTCCAATAACAGCAACCAGAACTTCGGCTTCACTTCAGTTCTATCGACACCTTCGTCAAGCCCCACACCGTTGAATTCGAACTCCGCGTATATCAATGGGAGCAACAGTACTGAAGATGAGAGAGAAAGCTATGACAGTAGTAACAAACTGCAATTTGAAATCTCAGATATTTTATATGTGAATGAGTTCGTGTAA 1101 0.4242 MGRAPCCDKNGLKKGPWTTEEDQKLIDYIQKHGCGNWRTLPQNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSIIGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLNLLDLSSILSSSLYGSSQINIQRLLGMQSLVNPELLKLASSLISSQQNDQQNQLCNPQIQNPIPHYAQFHQDPLQQTAGSTTLSDPSASLMPLTQPQLMVEPNAEEPYPSSFTDFSYQHHFQPSDWHKNGIDLSTLLTDDYIPQLSSYNNNFYDSDNQNLMYPPLSETSTFHSNNSNQNFGFTSVLSTPSSSPTPLNSNSAYINGSNSTEDERESYDSSNKLQFEISDILYVNEFV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00038 366 MobiDBLite consensus disorder prediction 312 339 - -
Gabi2880g00038 366 Gene3D - 69 116 - -
Gabi2880g00038 366 CDD SANT 69 112 IPR001005 -
Gabi2880g00038 366 FunFam Transcription factor MYB39 69 130 - -
Gabi2880g00038 366 CDD SANT 16 61 IPR001005 -
Gabi2880g00038 366 FunFam MYB-related transcription factor 13 66 - -
Gabi2880g00038 366 SMART sant 13 63 IPR001005 -
Gabi2880g00038 366 SMART sant 66 114 IPR001005 -
Gabi2880g00038 366 MobiDBLite consensus disorder prediction 312 348 - -
Gabi2880g00038 366 Gene3D - 13 66 - -
Gabi2880g00038 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi2880g00038 366 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2880g00038 366 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2880g00038 366 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi2880g00038 366 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2880g00038 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi2880g00038 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 280 - -
Gabi2880g00038 366 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00038 Gabi-Chr2880 337506 339097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00038 1 366 MYB Transcription Factor Family AT4G21440 53.826 2.48e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2880g00038 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00038 K09422 - gmx:778071 525.013