Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00034 ATGGGAAGATCATCAACGACGGAGGAAGAGGAGGAGGAAACTCTGCCGGAACATCTCCGGTGCAGCAGAACCGACGGGCGGCAATGGAGGTGCCGGCGGAGAGTGAAGGAAAACCTGAAGCTGTGCGAGATTCACTATCTACAAGGTCTGCATCGACAGCACAGGGAGAAGGTCCCCGAGTCACTGAAGCTTCAGAGAAAGAAGAAGAAAGGGCATAACAAAAACGACACCGTCGTTGAGATTAGGTCGAAGAGGAAGCGTGAATCGACAGAGGAATCGGTAGCTCTTTCTCCCGCGAGGAAAAAGGCCTCGAAGAAGAAGCAAGGTGATATGCAGTTGGAGCTGATAAGGATGGTTCTCGAGAGAGAGATTGAGAAGAAGAATAAGAAGAACAATAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGGAGAAAGAGAAAGAGGAGGAATTGCATAACAGTGAGGGAGAGGGAGAGTTGAGGAGAGAATTGCCGAATGGGGTGATGGAAATTGCTGCAGCTTCAACACCCAATGTGGGTTCTCATTGTGATGTTAAAGCAGTTACTCAACGTTACTTCAGGTCCAAGAATGTTGAAAGGGTTCCTCTTGGCAAGTTGCAGGCTGTACCATATGGACGAGACTTGAAGAAGGGAAATAGGAGGAAGAGGTGTCATTGGTGCCAGAGAAGTGATTCTTGGAATCTTATAAAGTGTTCCAGCTGCCAGAAAGAGTTTTTCTGTATGGATTGCGTTAAAGAACGGTATTTTGACACTCAAAGTGAAGTTACTATGGCATGTCCAGTTTGTCGGGGAACTTGCACCTGTAAAGATTGCTTGGCAAGTCAATACAAAGACAGTGAAAGTAAGGAATATTTGACTGGTAAAAGTAGAGTTGATAGAATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTATTAAAACAAATAAGTGAAGACCAGCATACAGAGCTAGAAACAGAAGCGAAAATTAATGGGAAAAGAATTTCTGATATTCTCATCAAGCAGGTCGAATTTGGCTGCAATGAGAAAAATTACTGCAATTACTGCAAAACACCCATTTTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTACTGCCTTTGCTTAAGTTGTTGTCAGGAATTAAATCAAGGAAGCACCTCTGAAGAAATTAACTCTTCTCTGTCCATGCTACCTGACAAAATGAATGCTTGCATTTCTAGTGAAAGCAGCCTTTTGGATGATAAGGCCATTTCTAGTGGCAATTTAGCTGATACTTCAATATTACCTGAGTGGACAAGTTGTAATGGTACTGACAGTGTATCATGCCCACCTACAGAGCTAGGTGGTTGTGGTGACAGCCACCTTGATTTGAGATCTGTTTTTCCCTTAAGTTGGATCAAAGAACTAGAAGTTAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTCAAGCTGTTTACTGTGTATTGACAAAGATCATAAAACTAACAGATATAAGCAATTGCAGGAAGCTGCTCGAAGAGAAGATTTTAATGATAATTGTATATTTTATCCTACAGTTTTGGACATCAGTAGTGATCATTTTGAACACTTTCAGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTGCGAGGTGTGCTTCAAAGTACACCAAACCTCAGTTGGGATCCACTGGTCATGTTCTGTGCTTATCTTGAGAGGAGCATTACAAGATATGAGAATAATAACGACTTACTTGAAGCTTGTTTGGACTGGTGTGAGGTGGAAATTAACATCAGGCAGTATTTTACCGGCTCTCTCAAATGTCAACCTCAGAAAAATATTTGGCACGATATGCTGAAACTAAAGGGGTGGCTGTCTTCCCAACTATTCAAAGAGCATTTTCCTGCTCATTTCGCCGAAGTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCCGTGTCTGGTCTTCTGAATTTAGCTGCAAATTTACCACAGGGGAGTACAAAACATGACATAGGACCATATATCTATATTTCATATGGCTGTGCAGACAAAGAAGCTGATTCTGTGACTAAACTCTGTTATGACTCATATGATGTGGTTAATATCATGGCACATACCACAGATCTCCCTGTCTCTACAGAACAGCTTACTAAAATAAGTAAGTTATTAAAAAAGCATAAAGCTCTATGTCAAAGGGAGTCTTCTAAAATTACTACTGAGCATGTAGAAGACAGGGAACAAAAGGGAATGCAGAGTATGGTAAGAGAAGGAACGAACTTTTTCAGGAGAGTCGATAGAACATCTTGCATCTCCACTGAAGCCAAAACAACAGCTAGTCAGAGTTTAGATACCAATATTTCTGAGGGTGGAGAATGTGGTTCCAATTCTGATACTGAAAAAGCTCAATACTCTTTACCTTTCCACGGGATAGATCAAAGCACTGAAATGTCTCCAGACCAGAATATGTTTACTGAGAATTCTGGTGCCCAGTGGGATGTATTTCGAAGACAAGATGTACCAAAGCTCTTAGAATACCTTAAAAGACACTCTGATGAATTGTCTCATGCCTGTGAATATCAAGAGAAGATGGTTCATCCAATTCTTGATCAGAGCTTCTTTCTTGACCAAACTCACAAAATGAGACTTAAAGAGGAGTTTAAAATTGAGCCGTGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATAATTCCTGCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTAATGTGGTGTTGGAATTTGTGTCCCCTGAGAATGTTACTGAGTGTATCCAATTGATTGATGAGGTTCGTCTGCTTCCAAAAGACCATAAAGCAAAAGTAGACAAGCTTGAGGTGAAGAAAATGGCCCTTTATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACGTGCAAAACATGA 2964 0.4086 MGRSSTTEEEEEETLPEHLRCSRTDGRQWRCRRRVKENLKLCEIHYLQGLHRQHREKVPESLKLQRKKKKGHNKNDTVVEIRSKRKRESTEESVALSPARKKASKKKQGDMQLELIRMVLEREIEKKNKKNNKKKKKKKKKKKKTKEKEKEEELHNSEGEGELRRELPNGVMEIAAASTPNVGSHCDVKAVTQRYFRSKNVERVPLGKLQAVPYGRDLKKGNRRKRCHWCQRSDSWNLIKCSSCQKEFFCMDCVKERYFDTQSEVTMACPVCRGTCTCKDCLASQYKDSESKEYLTGKSRVDRILHFHYLVCMLLPVLKQISEDQHTELETEAKINGKRISDILIKQVEFGCNEKNYCNYCKTPILDLHRSCLSCSYCLCLSCCQELNQGSTSEEINSSLSMLPDKMNACISSESSLLDDKAISSGNLADTSILPEWTSCNGTDSVSCPPTELGGCGDSHLDLRSVFPLSWIKELEVKAEEIVCSYDFPETLDKSSSCLLCIDKDHKTNRYKQLQEAARREDFNDNCIFYPTVLDISSDHFEHFQKHWGKGHPVVVRGVLQSTPNLSWDPLVMFCAYLERSITRYENNNDLLEACLDWCEVEINIRQYFTGSLKCQPQKNIWHDMLKLKGWLSSQLFKEHFPAHFAEVIDALPIQEYMNPVSGLLNLAANLPQGSTKHDIGPYIYISYGCADKEADSVTKLCYDSYDVVNIMAHTTDLPVSTEQLTKISKLLKKHKALCQRESSKITTEHVEDREQKGMQSMVREGTNFFRRVDRTSCISTEAKTTASQSLDTNISEGGECGSNSDTEKAQYSLPFHGIDQSTEMSPDQNMFTENSGAQWDVFRRQDVPKLLEYLKRHSDELSHACEYQEKMVHPILDQSFFLDQTHKMRLKEEFKIEPWTFEQHVGEAVIIPAGCPYQIRNPKCCVNVVLEFVSPENVTECIQLIDEVRLLPKDHKAKVDKLEVKKMALYSMSTAIKEIRELTCKT 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00034 987 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 985 IPR045109 GO:0032454|GO:0033169
Gabi2880g00034 987 Gene3D Cupin 532 959 - -
Gabi2880g00034 987 MobiDBLite consensus disorder prediction 124 166 - -
Gabi2880g00034 987 Pfam JmjC domain, hydroxylase 836 933 IPR003347 -
Gabi2880g00034 987 ProSiteProfiles Zinc finger RING-type profile. 227 273 IPR001841 -
Gabi2880g00034 987 Coils Coil 117 160 - -
Gabi2880g00034 987 MobiDBLite consensus disorder prediction 129 145 - -
Gabi2880g00034 987 MobiDBLite consensus disorder prediction 73 111 - -
Gabi2880g00034 987 ProSiteProfiles WRC domain profile. 15 61 IPR014977 -
Gabi2880g00034 987 MobiDBLite consensus disorder prediction 146 166 - -
Gabi2880g00034 987 Pfam WRC 16 57 IPR014977 -
Gabi2880g00034 987 ProSiteProfiles JmjC domain profile. 660 950 IPR003347 -
Gabi2880g00034 987 MobiDBLite consensus disorder prediction 52 111 - -
Gabi2880g00034 987 SMART cupin_9 641 950 IPR003347 -
Gabi2880g00034 987 SUPERFAMILY Clavaminate synthase-like 540 971 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00034 Gabi-Chr2880 299805 305883 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi2880g00034 JmjC 6.2e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00034 K15601 - gmx:100802129 1428.31