Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00029 ATGAAGAAGTGCGAGCTCTGCAAGTGTCCAGCAAAGTTGTTCTGTGAATCAGATCAAGCCAGCCTTTGTTGGGAATGCGATGCGAAGGTTCACAGTGCAAACTTTCTCGTCACTAAGCATCCCAGGATTCTTCTCTGCAATATTTGTCAAACACAAACAGCTTGGCATGGCACGGGACCCAAGTTTGTACCCACCATCTCCGTTTGCAACGTTTGTGTTAGCAATAATAATGAGACCTGCAATCAACATGACGATGATGATTACGATGATGACGACGACGACACGGAGGAGGATGATATAGAAAACGATGATGTTGGTGTGGAAGAAAATGAAGAGGAAAATCAAGTGGTTCCATGGACATCTACACCGCCACCACCAGTTTCTAGTTCTTCAAATGGTGAAGATGGTGTCTCAGACTAA 420 0.4476 MKKCELCKCPAKLFCESDQASLCWECDAKVHSANFLVTKHPRILLCNICQTQTAWHGTGPKFVPTISVCNVCVSNNNETCNQHDDDDYDDDDDDTEEDDIENDDVGVEENEEENQVVPWTSTPPPPVSSSSNGEDGVSD 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00029 139 MobiDBLite consensus disorder prediction 78 139 - -
Gabi2880g00029 139 CDD Bbox1_BBX-like 3 45 - -
Gabi2880g00029 139 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Gabi2880g00029 139 SMART bboxneu5 1 45 IPR000315 GO:0008270
Gabi2880g00029 139 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Gabi2880g00029 139 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 134 - -
Gabi2880g00029 139 MobiDBLite consensus disorder prediction 83 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00029 Gabi-Chr2880 245845 246478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00029 2 98 C2C2-CO-like Transcription Factor Family AT4G27310 47.222 2.46e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2880g00029 zf-B_box 8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00029 - - gmx:100805832 166.777