Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00025 ATGGGATTCAGCACGCATGAAAACTTGTTACCTGTTTTTCTCACTCTATCATGCTTTTACACAAATTTTGGCACAGCCTTAGACACCATTACAGCATCTCGGTTCATCAAAGATCCAGAAACTGTAAGCTCTAATGACAATGCATTCAAGCTAGGATTCTTCAGCCCCGAAAACACAACAAATCGCTATGTGGGAATATGGTATCTCTCAGAATCCAATGTCATATGGGTGGCCAACAGAGGACAACCACTACAAGATTCTTCTGGGATTGTCACCATATCTGACAACAGAAACATTGTAGTATTGAATGCAAAAAAACAGGTTGTTTGGTCATCAAATGTCTCAACTGTAGGATCCAATTCAACTGCCCAACTTCTAAATTCTGGAAACCTTGTCTTGTTGGATGACACTACAGGCATGATAATATGGGAGAGTTTAAAACATCCCTCCAATACATTCCTTCCAAATTTGATACTTAGCACCAACCAAATAACAGGGGAGAAAGTTAAAGTTACTTCATGGAAAAGCCCTTCTGATCCAGCCACTGGAAACTTCTCTGGAAGCCTTGAACGCCTCAGTGTTCCTGAAGTGTTTATCTGGAATCAAACACAACCATTCTGGCGGTCTGGTCCATGGAACGGTCAGGTGTTTATTGGTTTGGCGAAGATGTATACTTCTGCATATCTGAATGGATTCAACATAGAAAGAGAAGAAAATGGAACTGTTCAGATAACTTACTCTCTACCAAATAATTCTTTCTTTGGAACCATTGTCTTGAGTTCAGATGGCAAGCTGATATACACTGCCTGGATCAACAGACAACTAGTTGGGAAACGGGTAATCCAAGAAAGTAACTGTGATGTTTATGGCTTTTGTGGCACTTACGGAAGCTGTGATTCGAGAAATTCACCAATCTGCAGCTGTCTGAGAGGTTTTGAGCCGAAAAATGTTGATGAATGGAATAGACAAAACTGGACTAGTGGATGTGTGAGAAGGACAGAACTGCAGTGTAAGAGAGTGAGAAAGGGGAGTGAAGCAGGCAAAGAAGATGGATTTTTGAAACTGGAGATGTCTAAAGTGCCAGACTTTGCAGATCAGACAACTGTTTCTGATGAGACATGCAGAACTGATTGCCTAAATAATTGCTCATGTAAAGCATATGCACATGATCCTGGCATTGGATGTATGTCTTGGAGTGAAAAGTTAATTGACATACAAAGGTTCCAAAGTGGAGGAGTTGATCTTCACATCCGCCTAGCTTATTCTGAACTCGATGGGGAGAGAGAGAGAAACAAGAAAGTTATCATCCTAGTTACAGTTATAGTAGGAACGCTGATTGTTTCTACTTGTGCATATTTCTTATGGGCATGGACTTCTAAGCGGTCTGCAAGAAGAATGTTGCGGAACACAAGGGAAACTCATCCAGAAAACCGAACTGGAGGTCTTAGTGAAGAGCTGAAACGAGTTAAAAATTTCCAGGACCTGCCTGTATTTGATTTTAGATATATTTCAACTGCAACAGATAACTTCAATTCATCTAACAAGCTTGGCCAGGGTGGTTTTGGTTCAGTTTATAAGGGAGAATTACAAGATGGACAAGAAGTGGCAGTGAAAAGACTTTCAAGAGCATCTGGACAAGGGTTAGAAGAATTTATGAATGAAGTAATTGTGATTTCAAAACTTCAACACCGTAACCTTGTAAGACTGCTAGGCTGCTGTATTGAAGGAGAGGAAAAGATGTTGATCTATGAGTACATGCCCAATAAGAGTTTGGATTTTTATCTATTTGATCCAGTCAAAAAGGTGGTTTTGGATTGGCAGAAACGATTTAATATAATTGAAGGAATTTCTCGAGGTTTGCTTTATCTCCATAGAGATTCTAGATTAAGAATAATTCATAGAGACCTGAAGCCGAGTAATATCTTGTTGGATAGAGAACTGAATCCAAAAATATCTGACTTTGGTATGGCCAAAATCTTTGGAGGCAGCGAAGATGAGGCCAATACTAGAAGGGTTGTTGGAACATATGGCTACATGTCCCCTGAATATGCAATGGAAGGGCTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTCTTGGAGATAATTAGTGGTAGAAAAAACACAAGTTTTTATAATCACGAGCGGTCACTGAGCCTCTTAGGATATGCATGGAAACTATGGAATGAAGATGAGATTATATCTCTTATAGATCCAAATATATCTAATCCAGATCATGGCAATGACATTTTGAGATGCATACACATTGGACTTCTTTGTGTGCAAGAACTTGCAAGGGAGAGGCCTACCATGGCCACTGTGGTTTCAATGCTTAAAAGTGAGATCGTTAACTTTCCTCCTCCACAGCAACCTGCATTCATCCAGAAGCAGCTTGTGTTGAGTGGAGAGTCATCTCAACCGAGCCACAGATCAAGTTCCATCAATGATGTTACTGTCACAAATTTGCAAGGTAGATAG 2487 0.4005 MGFSTHENLLPVFLTLSCFYTNFGTALDTITASRFIKDPETVSSNDNAFKLGFFSPENTTNRYVGIWYLSESNVIWVANRGQPLQDSSGIVTISDNRNIVVLNAKKQVVWSSNVSTVGSNSTAQLLNSGNLVLLDDTTGMIIWESLKHPSNTFLPNLILSTNQITGEKVKVTSWKSPSDPATGNFSGSLERLSVPEVFIWNQTQPFWRSGPWNGQVFIGLAKMYTSAYLNGFNIEREENGTVQITYSLPNNSFFGTIVLSSDGKLIYTAWINRQLVGKRVIQESNCDVYGFCGTYGSCDSRNSPICSCLRGFEPKNVDEWNRQNWTSGCVRRTELQCKRVRKGSEAGKEDGFLKLEMSKVPDFADQTTVSDETCRTDCLNNCSCKAYAHDPGIGCMSWSEKLIDIQRFQSGGVDLHIRLAYSELDGERERNKKVIILVTVIVGTLIVSTCAYFLWAWTSKRSARRMLRNTRETHPENRTGGLSEELKRVKNFQDLPVFDFRYISTATDNFNSSNKLGQGGFGSVYKGELQDGQEVAVKRLSRASGQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNKSLDFYLFDPVKKVVLDWQKRFNIIEGISRGLLYLHRDSRLRIIHRDLKPSNILLDRELNPKISDFGMAKIFGGSEDEANTRRVVGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNTSFYNHERSLSLLGYAWKLWNEDEIISLIDPNISNPDHGNDILRCIHIGLLCVQELARERPTMATVVSMLKSEIVNFPPPQQPAFIQKQLVLSGESSQPSHRSSSINDVTVTNLQGR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00025 828 ProSiteProfiles Protein kinase domain profile. 510 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00025 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Gabi2880g00025 828 SUPERFAMILY Protein kinase-like (PK-like) 494 813 IPR011009 -
Gabi2880g00025 828 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Gabi2880g00025 828 Pfam Protein tyrosine and serine/threonine kinase 513 781 IPR001245 GO:0004672|GO:0006468
Gabi2880g00025 828 SMART serkin_6 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00025 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Gabi2880g00025 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 772 - -
Gabi2880g00025 828 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Gabi2880g00025 828 ProSiteProfiles PAN/Apple domain profile. 337 420 IPR003609 -
Gabi2880g00025 828 MobiDBLite consensus disorder prediction 807 828 - -
Gabi2880g00025 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Gabi2880g00025 828 Gene3D Transferase(Phosphotransferase) domain 1 586 788 - -
Gabi2880g00025 828 SMART ntp_6 347 419 IPR003609 -
Gabi2880g00025 828 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Gabi2880g00025 828 PIRSF SRK 3 828 IPR024171 GO:0004674
Gabi2880g00025 828 SMART blect_4 33 149 IPR001480 -
Gabi2880g00025 828 CDD B_lectin 33 149 IPR001480 -
Gabi2880g00025 828 Pfam D-mannose binding lectin 74 175 IPR001480 -
Gabi2880g00025 828 CDD PAN_AP_plant 333 420 - -
Gabi2880g00025 828 CDD STKc_IRAK 516 782 - -
Gabi2880g00025 828 Gene3D Phosphorylase Kinase; domain 1 484 585 - -
Gabi2880g00025 828 FunFam receptor-like serine/threonine-protein kinase SD1-8 483 585 - -
Gabi2880g00025 828 Pfam PAN-like domain 347 405 IPR003609 -
Gabi2880g00025 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Gabi2880g00025 828 Gene3D - 23 147 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00025 Gabi-Chr2880 181829 185505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00025 424 801 Receptor kinase-like Gene Family AT4G05200 51.852 1.92e-129 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00025 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00025 - - gmx:112998788 1313.13