Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00024 ATGGGGTTCAGATTCAGTCAGTTTAGACACTTAACCTTTTTGCTAGTACTTTCCTTTTTGTCCATACACATTGGCACTTCCCTAGACACCATCTCATCATCCAATTTCCTGAAGGACCCTGAAACTTTAAGCTCCAGTGAAGGTTTGTTCCAGCTTGGATTCTTCACCCCTCCAAACTCAACTTTTTCCTACCTGGGAATTTGGTATTCTGTGTCTAGAACCCCGCAGATATGGGTAGCTAACAGAGACCAACCAGTGAAGGATTCTTCTGGAACAGTCAAAATATCTGAGGATGGAAATCTTGTTGTGATGAACGGACAGAAAGAGATCCTTTGGTCAACAAATGTTTCCAATATTATTGCATCTAATACAACAGCTCAGCTTCTGAATACTGGCAATCTTGTGTTGCAAGAAACCACTACAGGAAGCATGTTATGGCAGAGTTTCCAACACCCTTGTAATTCATTGTTGCAGCAAATGAAAGTTAGTAGGAATAAAACCAGCGGTGAGAGAATGGAACTCACCTCATGGAAAAGCCCTCAGGATCCATCCATTGGAAACTTCTCCACCAGTCTTGAAGGCCTAAACATCCCTGAAGTTTTCACATGGAGAGGAAGTCAACCATACTGGCGAAGTGGTCCATGGAATGGTCAGATCTTTCTTGGAATACCTAACATGACCACTAATTATCTTGATGGATTTTACATAGGTGGGCAAGATGAAGGGAAAGGCAATTATTATCTCACTTATGCATTTGCAAATCAGTCTGAGTTGATAATATATGGGTTAGGTATTGATGGAAACACAGCCGAAGTGCATTGGGATTATGGAAAGAGAAATTGGTGGATCTATTGGGAATCTATAATTTCTGAGTGTGATGTTTATGGCATATGTGGAGCATTTGGAAGCTGTGATTCTAGAAGTTCACCTATCTGCACCTGTTTGACAGGATTTGAGCCAAGGAATGTGGAGGAATGGAATACACAAAACTGGACCAGTGGATGTGTTAGGAAGGGACCTCTGCAGTGTGGAAGAGTCACAAATGGAGATGGGTTTCTCAAGCTGCCAAATACCAAAGTTCCGGACTTTATCCAGTGGTCATCTTCTCTTGAAGATGTTTGTAGAACTCGGTGCTTGCAAAACTGTTCTTGTATAGCATATGCATATGATGCTGGCGTTGGCTGTATGTCATGGAGTGCAAACTTAATTGACATACAGAGGTTTTCAAGCGGAGGAACTAATCTTTACATTCGGGTTCCCTATTCAGAACTTGAAGAAAAGAAGAAGAATGCCACAATGCTCATTGCAGTTACGGTCATAATAGGAACGATTTTCATTGTGACCTGTGGATATGTCATGTGGAAAAGAACTACAAGAGGAGAGAAAAATCATAAAAGAATCCAGGTAAATGACCTGAGTAAACTCCCAGAGCTTTCCCAATTTGAGCTTGAAAAGCTTGCTACTGCAACAAACAATTTTCACTTAGCTAATAAGCTAGGGCAAGGTGGATTTGGACCAGTATACAAGGGTACATTGGAAGGGGGACAAGAAATAGCAGTTAAAAGACTTTCAAGAACATCTGGACAAGGGCTAGAAGAATTTATGAATGAGGTTGGGCTAATATCAAAGCTTCAACATCGTAACCTCGTGAGACTTCTTGGATGTTGTATCGAAGGAGATGAAAAGATTTTGATATATGAGTACATGCCAAACAGAAGTTTGGATGCCTATATGTTTGATCCATCTGAAGAGGTACTAAATTGGGAAAAACGTTTTAATATAATTGAAGGAATTGCTCGGGGTCTGCTTTACCTTCATAGAGACTCTAGACTAAGAATTATCCACAGAGACCTCAAGTTAAGTAATATATTGCTGGATGAAGAGCTGAATCCAAAAATATCAGATTTTGGTATGGCAAGGATTTTTTGTCGCAGTGAAGATGAGGCCAATACTAGAAGGATTGTAGGAACATGTGGTTATATATCTCCAGAATATGCCATGGAAGGGCTATTTTCAGAAAAGTCCGATGTCTTTAGCTTTGGTGTTTTACTGCTAGAAGTTGTCAGCAGGAGAAAAAATACCAGTTTTTATGAGGATGCTGTATCATTGAGCCTTTTAGGATATGCATGGAAATTGTGGAACGATGACAACATTACTTCTTTAATAGACCCAGAAATATCAAACCCAAACTTCCATGCTGATATTTTTAGATGTATACATATTGGTCTTCTATGTGTGCAAGAACTTGCAAGAGACAGGCCTACAATGACTGCAGTACTTTCAATGCTTAACAATGAGACTGTTAATCTTCCACCCCCAAGGCAGCCAGCATTTATTCAAAGGCAGACCATGTTGGACGTAGGATGCTCTCATAAAAGTGATGCAATATACTCTATGAATTATGCGAGTGTAACAAACACCATCTCATCATCCTATTTCCTCAAGGACCCTGAAACTTTAAGCTCCACTGACGGTTTGTTCCAGCTTGGATTCTTCACCCCTCCAAACTCAACTTTTTCCTACCTGGGAATTTGGTATAATGTGTCTAAAAACCCGCAGATATGGGTAGCTAACAGAGACCAACCAGTGAAGGATTCCTCTGGAACAGTCAAAATATCTGAGGATGGAAACCTTGTTGTCATGAATGGACAGAAAGAGATCCTTTGGTCAACAAATGTGTCCAATATTATTGCATCTAATACAACAGCTCAGCTTCTGAATACTGGCAATCTTGTGTTGCAAGAAACCACTTCAGGAAGCATGGTTTGGCAGAGTTTCCAACACCCTTGTAATGCGTTGTTGCAGCAAATGAAACTTAGTGCAAATAAAACCAGCGGTGAGAGAATAAAGCTCACCTCATGGAAAAGCCCTCAGGATCCATCCATTGGAAACTTCTCTACCGGTCTTGAAAGCCTAAAAATCCCTGAAATTTTTACATGGAGAGGAAGTCAACCATACTGGCGAAGTGGTCCATGGAACGGTCAGATCTTTCTTGGGATACCTGACATGTACTCTGATTATCTTGATGGATTTTACTTAGGTGGGCAAGATGAAGGGAACGGCAATTACTATCTCACTTATACGTATGCAAATCAGTCTGAGTTGAGAATATATGGGTTGAGTATTGATGGAAATATATACGAAGTGTATTGGGATTATGGAAAGAGAAATTGGATGATCGATTGGGAAGCTATAAATTCTGATTGTGATGTTTATGGCATATGTGGAGTATTTGGAAGTTGTGATTCTAGAAGTTCACCTATCTGCACCTGTTTGACAGGATTTGAGCCAAGGAATGTTGAGGAATGGAATACACAAAACTGGACCAGTGGATGTGTTAGGAAGGAACCTCTGCAGTGTGAAAGAGTCAAAAATGGAAGTGAAGCTGGTAATGGAGATGGGTTTCTCAAGCTGCCAAATAGCAAAGTTCCTGACTTTATCCAGTGGTCGTCTTCTCTTGAAGATGTTTGTAGAACTCAGTGCTTGCAAAACTGTTCTTGTATAGCATATGCATATGATGCTGGCGTTGGCTGTATGTCATGGAGTGCAAAGTTAATTGACATACAGAGGTTCTCAATTAATGGAGGAACTGATCTTTACATTCGGGTTCCCTATTCAGAACTTGATACAGAGAAAACATTTAAGAAAAATCAGAGAAGCAGCCAGGTAAATGACCTGAGTAAACTTCCGGAGCTTTCCCAATTTGAGCTTGAAAAGCTTGCTACTGCAACAAACAACTTTCACTTAGCTAATAAGCTAGGGCAAGGTGGATTTGGACTAGTATACAAGGGTACATTGGAAGGTGGACAGGAAATAGCAGTTAAAAGACTTTCAAGAACATCTGGACAAGGGCTAGAAGAATTTATGAATGAGGTTGTGCTAATATCAAAGCTTCAACATCGTAACCTCGTGAGACTTCTTGGATGTTGTATCGAAGGAGATGAAAAGATTTTGGTCTATGAGTACATGCCAAACAGAAGTTTGGATGCCTATATGTTTGATCCGTCTGCAGAGGTACTAAATTGGGAAAAACGTTTTAATATAATTGAAGGAATTGCTCGGGGTCTGCTTTACCTTCATAGAGACTCTAGACTAAGAATTATCCACAGAGACCTCAAGTTAAGTAATATATTGCTGGATGAAGAGCTGAATCCAAAAATATCAGATTTTGGCATGGCAAGGATTTTTGGTCGCAGTGAAGATGAAGCAAATACTAGAAGGATTGTCGGAACATGTGGTTATATATCTCCAGAATATGCCATGGAAGGGCTATTTTCAGAAAAGTCTGATGTCTTTAGCTTTGGTGTTTTACTGCTAGAAGTTGTCAGCAGGAGAAAAAATACCAGTTTTTATGAGGATGCTGTATCATTGAGCCTTTTAGGATATGCTTGGAAATTGTGGAATGATGACAATATTACATCTTTAATAGACCCGGAAATATCAAATCCAAGCTTCCATGCAGATATTTTTAGATGTATACATATTGGTCTTCTATGTGTGCAAGAACTTGCAAGAGACAGGCCTACAATGACTGCAGTACTTTCAATGCTTAATAATGAGACTGTTAATCTTTCACCCCCAAGGCAGCCAGCATTTATTCAAAGGCAGAACATGTTGGACTCGTCAGATCTGCGACTTTGGTTGGATGGGCAAGATTATACATCCCATCTCACTACCAAGGCTGATTCTGTGGCAGCTAATGAGCGCACACGATGGAAGGTGATTGATGCTCAGTTGTGTAGTCTTATTAAAGCTACTCTTCATCCGTCAATTAAGCAGATTTTTCGACTTGCCAATACCTGTGAAGCTATTTGGAGTCAGGCAAAAGCATTGTACACCAATGATACACAGCGAATCTATGGTGTGTGTCAGAAATTGATGACTACCTTTGCTCCTCAGGACTTCAATTGTCCTATGACTGAATATTTGGGAAAAGCTCAGAGTTTGCTTCATGGTTTTAATGAACTTCTGCCCCTCACTGGTGATGTTACTAAGGAACAGGAACAACGTAATACACTCTTTATGTTGTTCATTTTATATGGTTTACCTGACCATTTGTCTGTCAATCGGGATCAAATTTTGGGATCTGTTACAGCTCCTACACTGGATTCTGTGATGTCTACCTTGCTTAGGATTCTACCTAAGCCCTTTACGTCACCAACACCTCCTGTGACGCATGTACTTCCAGATGATACTGTTGACTCTCCTGCCCTTGCTGCTCAGGGTTATGGTCGTGGACGTAAACTCTCTAAGGGAAATGTCAGGACGAGGAACCCGAATAACCCTGGACTATCGAATGCCAATGCACAGCCAGATCCTGTTTTGGCTGCTTTAGTTAGGCCCCGAAGTGGTCGTGGGGCAACAGGTGGGCAGTCTGATCCCGTGGTTGAAACTCTTGCAGATTTGCAAAGGGAGTTGACTGCTAGTCGGCAAGCTAATGAGAACTTGATGAAAACGAATGAAGATACGCGGAATGCTATGGCCGCGATGATGAACGAGTTGAGGACTTTGAGGGGTGCTAGACCAGAGAACCGACAACCCATTCTTCCTCCTCACACTGCCGCGCCTACTCCACATACTCTCCATGAAGAGGGTGGAGCGGGTAACAATGAGGATGAGGCTAGTCACCATTCTGGTAGTCATGTCATCACACTGAGGTTCGTCAACCACGTGTAG 5676 0.4116 MGFRFSQFRHLTFLLVLSFLSIHIGTSLDTISSSNFLKDPETLSSSEGLFQLGFFTPPNSTFSYLGIWYSVSRTPQIWVANRDQPVKDSSGTVKISEDGNLVVMNGQKEILWSTNVSNIIASNTTAQLLNTGNLVLQETTTGSMLWQSFQHPCNSLLQQMKVSRNKTSGERMELTSWKSPQDPSIGNFSTSLEGLNIPEVFTWRGSQPYWRSGPWNGQIFLGIPNMTTNYLDGFYIGGQDEGKGNYYLTYAFANQSELIIYGLGIDGNTAEVHWDYGKRNWWIYWESIISECDVYGICGAFGSCDSRSSPICTCLTGFEPRNVEEWNTQNWTSGCVRKGPLQCGRVTNGDGFLKLPNTKVPDFIQWSSSLEDVCRTRCLQNCSCIAYAYDAGVGCMSWSANLIDIQRFSSGGTNLYIRVPYSELEEKKKNATMLIAVTVIIGTIFIVTCGYVMWKRTTRGEKNHKRIQVNDLSKLPELSQFELEKLATATNNFHLANKLGQGGFGPVYKGTLEGGQEIAVKRLSRTSGQGLEEFMNEVGLISKLQHRNLVRLLGCCIEGDEKILIYEYMPNRSLDAYMFDPSEEVLNWEKRFNIIEGIARGLLYLHRDSRLRIIHRDLKLSNILLDEELNPKISDFGMARIFCRSEDEANTRRIVGTCGYISPEYAMEGLFSEKSDVFSFGVLLLEVVSRRKNTSFYEDAVSLSLLGYAWKLWNDDNITSLIDPEISNPNFHADIFRCIHIGLLCVQELARDRPTMTAVLSMLNNETVNLPPPRQPAFIQRQTMLDVGCSHKSDAIYSMNYASVTNTISSSYFLKDPETLSSTDGLFQLGFFTPPNSTFSYLGIWYNVSKNPQIWVANRDQPVKDSSGTVKISEDGNLVVMNGQKEILWSTNVSNIIASNTTAQLLNTGNLVLQETTSGSMVWQSFQHPCNALLQQMKLSANKTSGERIKLTSWKSPQDPSIGNFSTGLESLKIPEIFTWRGSQPYWRSGPWNGQIFLGIPDMYSDYLDGFYLGGQDEGNGNYYLTYTYANQSELRIYGLSIDGNIYEVYWDYGKRNWMIDWEAINSDCDVYGICGVFGSCDSRSSPICTCLTGFEPRNVEEWNTQNWTSGCVRKEPLQCERVKNGSEAGNGDGFLKLPNSKVPDFIQWSSSLEDVCRTQCLQNCSCIAYAYDAGVGCMSWSAKLIDIQRFSINGGTDLYIRVPYSELDTEKTFKKNQRSSQVNDLSKLPELSQFELEKLATATNNFHLANKLGQGGFGLVYKGTLEGGQEIAVKRLSRTSGQGLEEFMNEVVLISKLQHRNLVRLLGCCIEGDEKILVYEYMPNRSLDAYMFDPSAEVLNWEKRFNIIEGIARGLLYLHRDSRLRIIHRDLKLSNILLDEELNPKISDFGMARIFGRSEDEANTRRIVGTCGYISPEYAMEGLFSEKSDVFSFGVLLLEVVSRRKNTSFYEDAVSLSLLGYAWKLWNDDNITSLIDPEISNPSFHADIFRCIHIGLLCVQELARDRPTMTAVLSMLNNETVNLSPPRQPAFIQRQNMLDSSDLRLWLDGQDYTSHLTTKADSVAANERTRWKVIDAQLCSLIKATLHPSIKQIFRLANTCEAIWSQAKALYTNDTQRIYGVCQKLMTTFAPQDFNCPMTEYLGKAQSLLHGFNELLPLTGDVTKEQEQRNTLFMLFILYGLPDHLSVNRDQILGSVTAPTLDSVMSTLLRILPKPFTSPTPPVTHVLPDDTVDSPALAAQGYGRGRKLSKGNVRTRNPNNPGLSNANAQPDPVLAALVRPRSGRGATGGQSDPVVETLADLQRELTASRQANENLMKTNEDTRNAMAAMMNELRTLRGARPENRQPILPPHTAAPTPHTLHEEGGAGNNEDEASHHSGSHVITLRFVNHV 1891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00024 1891 SUPERFAMILY alpha-D-mannose-specific plant lectins 842 994 IPR036426 -
Gabi2880g00024 1891 SMART blect_4 34 152 IPR001480 -
Gabi2880g00024 1891 SMART blect_4 811 929 IPR001480 -
Gabi2880g00024 1891 CDD PAN_AP_plant 340 420 - -
Gabi2880g00024 1891 MobiDBLite consensus disorder prediction 1865 1879 - -
Gabi2880g00024 1891 SMART ntp_6 1130 1203 IPR003609 -
Gabi2880g00024 1891 SMART ntp_6 347 419 IPR003609 -
Gabi2880g00024 1891 CDD B_lectin 34 152 IPR001480 -
Gabi2880g00024 1891 Pfam S-locus glycoprotein domain 987 1098 IPR000858 GO:0048544
Gabi2880g00024 1891 Pfam S-locus glycoprotein domain 210 321 IPR000858 GO:0048544
Gabi2880g00024 1891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1367 1379 IPR008271 GO:0004672|GO:0006468
Gabi2880g00024 1891 Gene3D Transferase(Phosphotransferase) domain 1 569 770 - -
Gabi2880g00024 1891 Gene3D Transferase(Phosphotransferase) domain 1 1323 1527 - -
Gabi2880g00024 1891 ProSitePatterns Protein kinases ATP-binding region signature. 1253 1275 IPR017441 GO:0005524
Gabi2880g00024 1891 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 569 771 - -
Gabi2880g00024 1891 Pfam PAN-like domain 1131 1188 IPR003609 -
Gabi2880g00024 1891 Pfam PAN-like domain 346 405 IPR003609 -
Gabi2880g00024 1891 SUPERFAMILY Protein kinase-like (PK-like) 1222 1517 IPR011009 -
Gabi2880g00024 1891 Gene3D Phosphorylase Kinase; domain 1 453 568 - -
Gabi2880g00024 1891 Gene3D Phosphorylase Kinase; domain 1 1207 1322 - -
Gabi2880g00024 1891 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 149 - -
Gabi2880g00024 1891 SUPERFAMILY Protein kinase-like (PK-like) 476 763 IPR011009 -
Gabi2880g00024 1891 ProSiteProfiles Bulb-type lectin domain profile. 805 926 IPR001480 -
Gabi2880g00024 1891 CDD STKc_IRAK 499 765 - -
Gabi2880g00024 1891 CDD PAN_AP_plant 1117 1204 - -
Gabi2880g00024 1891 Pfam Protein tyrosine and serine/threonine kinase 494 762 IPR001245 GO:0004672|GO:0006468
Gabi2880g00024 1891 Pfam Protein tyrosine and serine/threonine kinase 1248 1515 IPR001245 GO:0004672|GO:0006468
Gabi2880g00024 1891 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1323 1525 - -
Gabi2880g00024 1891 Coils Coil 1799 1833 - -
Gabi2880g00024 1891 CDD STKc_IRAK 1253 1519 - -
Gabi2880g00024 1891 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Gabi2880g00024 1891 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 801 926 - -
Gabi2880g00024 1891 Pfam D-mannose binding lectin 77 178 IPR001480 -
Gabi2880g00024 1891 Pfam D-mannose binding lectin 854 955 IPR001480 -
Gabi2880g00024 1891 ProSiteProfiles PAN/Apple domain profile. 1120 1204 IPR003609 -
Gabi2880g00024 1891 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 217 IPR036426 -
Gabi2880g00024 1891 CDD B_lectin 811 929 IPR001480 -
Gabi2880g00024 1891 MobiDBLite consensus disorder prediction 1843 1883 - -
Gabi2880g00024 1891 ProSiteProfiles Protein kinase domain profile. 1247 1548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00024 1891 Gene3D - 23 150 IPR036426 -
Gabi2880g00024 1891 Gene3D - 800 927 IPR036426 -
Gabi2880g00024 1891 MobiDBLite consensus disorder prediction 1753 1768 - -
Gabi2880g00024 1891 MobiDBLite consensus disorder prediction 1744 1771 - -
Gabi2880g00024 1891 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1211 1322 - -
Gabi2880g00024 1891 ProSiteProfiles PAN/Apple domain profile. 343 420 IPR003609 -
Gabi2880g00024 1891 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Gabi2880g00024 1891 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 753 - -
Gabi2880g00024 1891 SMART serkin_6 493 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00024 1891 SMART serkin_6 1247 1522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00024 1891 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 457 568 - -
Gabi2880g00024 1891 ProSiteProfiles Protein kinase domain profile. 493 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00024 1891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00024 Gabi-Chr2880 158660 176866 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00024 459 778 Receptor kinase-like Gene Family AT4G11530 55.864 5.97e-113 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00024 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00024 - - adu:107468469 2150.94