Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00022 ATGGTTTGGTATGGGGAGTTGGTTGATGTTCAGCACTTTGGAAATGGAGGAAATACATTGCACATCCGCCTCTCTGATTCTGATTTAGGTGATGGCGGAAAAAAGAACAAGGTTGTGATAATATCAGCTGTTGTGGTGGGGTTAATCTTCCTAGGAATCATTGTATGGCTGGTATGGAGGTTCAAGGGAAAACTCAAAGTTTTGCCTACAGTTTCCTCGGCTTCATGCTGCAAGAATAGTGATGTAATACCGGTCTTTGATGTAAGGAAGAGTAGAGACTTGTCAGCAGAATTTTCAGGATCAGCCGACTTTAGTTTGGAAGGGAATCAACTAAGTGGACCAGAACTTCCATTTTTCAATTTTAGTTGCATTTCAATAGCGACAAACAATTTCTCAGAAGAAAATAAGCTTGGGGAAGGGGGCTTCGGCCCCGTTTACAAGGGAAAGCTAGGCGGGGAAGAAATAGCTGTCAAGAGGCTTTCAAGACGGTCTGGCCAAGGTTTAGAGGAGTTCAAGAATGAAATAATGCTGATAGCGAAATTACAACACAGAAATTTGGTTAGACTTATGGGTTGTTCTATTGAAGGGGAAGAAAGGCTGCTGGTATATGAATACATGCCAAACAAAAGCTTGGATTGCTTTTTATTTGATCCAGTCAAGCAAACACAAACAAAACTAGACTGGACAAGACGGTTTGAAATCATTGAAGGCATTGCAAGAGGACTACTTTATTTGCACCGAGATTCAAGACTCAGAATAATACATAGAGATCTAAAAGCGAGCAACATTTTGTTGGATGAAAACATGAACCCGAAAATATCGGACTTTGGCTTGGCCAGGATATTTGGTGGAAACCAAAATGAAGCCAATACAACCAGAGTGGTTGGTACATATGGTTATATGTCCCCGGAATATGCAATGGAAGGTCTGTTTTCAGTTAAATCTGATGTATATAGTTTTGGTGTATTATTACTAGAGATAGTGAGTGGCCGCAGGAACACTAGCTTTCGTCACTCAGATGACTCAAGTCTCATAGGACATGCCTGGCATCTTTGGAATGAGCACAGGGCAATGGAGCTTGTTGATCCTTGTATTCGTGATTCTAGCCCTAAAAACAAAGCTTTGAGATGCATACATATCGGTATGTTATGTGTTCAAGATTCAGCAGCTCATAGACCAAACATGTCCACTGTGGTGTTGATGCTGGAAAGTGAAGCATCAACTCTTCCCTTGCCTATACAACCTTTGATTACTTCTATGAGGAGATCTGAGAACAGAGAATTTTGTGTGGATGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTAGTAGGGAGATAG 1344 0.4107 MVWYGELVDVQHFGNGGNTLHIRLSDSDLGDGGKKNKVVIISAVVVGLIFLGIIVWLVWRFKGKLKVLPTVSSASCCKNSDVIPVFDVRKSRDLSAEFSGSADFSLEGNQLSGPELPFFNFSCISIATNNFSEENKLGEGGFGPVYKGKLGGEEIAVKRLSRRSGQGLEEFKNEIMLIAKLQHRNLVRLMGCSIEGEERLLVYEYMPNKSLDCFLFDPVKQTQTKLDWTRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTTRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIVSGRRNTSFRHSDDSSLIGHAWHLWNEHRAMELVDPCIRDSSPKNKALRCIHIGMLCVQDSAAHRPNMSTVVLMLESEASTLPLPIQPLITSMRRSENREFCVDGLDVSNDLTVTMVVGR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00022 447 SUPERFAMILY Protein kinase-like (PK-like) 116 426 IPR011009 -
Gabi2880g00022 447 Gene3D Transferase(Phosphotransferase) domain 1 206 409 - -
Gabi2880g00022 447 Pfam Protein tyrosine and serine/threonine kinase 134 400 IPR001245 GO:0004672|GO:0006468
Gabi2880g00022 447 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 424 - -
Gabi2880g00022 447 CDD STKc_IRAK 137 403 - -
Gabi2880g00022 447 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 206 410 - -
Gabi2880g00022 447 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 96 205 - -
Gabi2880g00022 447 SMART serkin_6 131 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00022 447 Gene3D Phosphorylase Kinase; domain 1 107 205 - -
Gabi2880g00022 447 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00022 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00022 Gabi-Chr2880 140659 143483 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00022 88 415 Receptor kinase-like Gene Family AT4G23230 61.212 3.52e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00022 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00022 - - gmx:102660295 790.801