Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00021 ATGGAAGGCCAAGAAATTGCTGTCAAGAGGTTATCAAAAACCTCAGGGCAAGGAAATGAAGAATTTAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTATTTGGTTGCTGCATTGATATGGATGAGAAGCTGCTGGTGTATGAATACATGGAAAATAGAGGCCTTGATTCCATTTTGTTTGACAAAGCCAAAAGACCCTTACTGAACTGGAGAAGACGCTTCAGCATAATATGCGGAATAGCTAGAGGGCTTCTTTATCTTCATCATGATTCCAGATTCAGGATTATCCATAGGGATCTCAAGGCAAGCAACATTCTACTTGACAGTGAAATGAACCCAAAGATATCAGACTTTGGGATGGCTAGAATTTTTGGCACAGATCAGACAGAAGCAAATACATTGAGAGTTGTTGGAACATATGGCTATATGGCTCCTGAATATGCTATGGATGGGAACTTCTCAGTGAAATCTGATGTTTTTAGCTTTGGAGTTCTAGTGCTGGAGATCATAAGTGGAAAGAAGAATAGAGGATTCTATTACTCAAACAATGAATTGAATCTTCTAGCGAATGTATGGAAGCAGTGGAAAGAAGGCAGTGCATTGGAACTCATTGATCCATCAATTGGTGAATCATATTCACCATCTGAAGTTCTTAGATGCATACACGTTGGACTCTTATGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGTCTTCAGTGATCTTGATGCTGAGTAGTGAGACTTCACTAATGCCACAACCAAGAAACCCTGGATTTTCCGTTGGGAGGAATCCTGGGGAGACCGATTCTTCTTCAAGTAAGCAAGATGAACCGTGGAGTGTGAACCAAGTCACTGTCACATTGCTAGATGCTAGGTAG 903 0.4086 MEGQEIAVKRLSKTSGQGNEEFKNEVKLIVKLQHRNLVRLFGCCIDMDEKLLVYEYMENRGLDSILFDKAKRPLLNWRRRFSIICGIARGLLYLHHDSRFRIIHRDLKASNILLDSEMNPKISDFGMARIFGTDQTEANTLRVVGTYGYMAPEYAMDGNFSVKSDVFSFGVLVLEIISGKKNRGFYYSNNELNLLANVWKQWKEGSALELIDPSIGESYSPSEVLRCIHVGLLCVQERAEDRPTMSSVILMLSSETSLMPQPRNPGFSVGRNPGETDSSSSKQDEPWSVNQVTVTLLDAR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00021 300 PIRSF ILK 1 263 - -
Gabi2880g00021 300 SMART serkin_6 2 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00021 300 MobiDBLite consensus disorder prediction 271 292 - -
Gabi2880g00021 300 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00021 300 Pfam Protein tyrosine and serine/threonine kinase 4 249 IPR001245 GO:0004672|GO:0006468
Gabi2880g00021 300 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
Gabi2880g00021 300 Pfam Domain of unknown function (DUF3403) 254 300 IPR021820 GO:0004674
Gabi2880g00021 300 MobiDBLite consensus disorder prediction 257 292 - -
Gabi2880g00021 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
Gabi2880g00021 300 Gene3D Transferase(Phosphotransferase) domain 1 57 261 - -
Gabi2880g00021 300 FunFam Uncharacterized protein 1 56 - -
Gabi2880g00021 300 CDD STKc_IRAK 3 252 - -
Gabi2880g00021 300 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 57 260 - -
Gabi2880g00021 300 Gene3D Phosphorylase Kinase; domain 1 1 56 - -
Gabi2880g00021 300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00021 Gabi-Chr2880 131310 132859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00021 3 295 Receptor kinase-like Gene Family AT4G11530 60.403 1.35e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00021 PK_Tyr_Ser-Thr 9.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00021 - - gmx:100802437 538.88