Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00020 ATGGGAGGTTTCACCAACCTCCTCCGTTTCTCCCTCTTTTGGTTCTTAACTTCGCTCACTTTTTTCACCACAATTTCAATCTCTGCAGATACCTTAACTACAACACAAATTCTCAGAACCAACCAAACCCTTATATCCCAAAACGAAACCTTCGTTCTGGGCTTCTTTCCTGGGAGCGATTCCAACTGGTATGTGGGCATATGGTACAAGAACATTGATGATAGAACACTGGTTTGGGTGGCAAACAGAGACAACCCACTTGAGGACTCCACAGGATTTCTCATGATTGGAGACAAAGGAAACATAGTTATTGACAATCCATCAGGTAACCCTGTATGGTCCTCGAATCAAACCACAGCTAATAACCCAATTGTTCAGCTTTTGGATTCTGGGAATTTAGTTGTGAAAGAAGCAAACTTGAGTGACCCCACCAAGTATCTATGGCAAAGCTTCGATTACCCAACAGATACACTGGTACCTGGCATGAAGATGGGGTGGAACTTGGACACAGGCATGGAGAAGCACATAACATCTTGGAAGAACACAGGACAAGACCCTTCAACAGGAGGTTATTCTTTCAAGATAGATTATCATGGACTACCAGAAATTTTCCTGAGGAACAATCAGAACATAACATACAGGAGTGGTCCTTGGAATGGTGAGAGATTCAGCGGGGTACCAGAGATGGAACCCGATACAGATTCTATTGTATTCACGTTTTCTGAAGATGAACATGGGGTATACTACTCATTTTCCATTGGGAACCAATCCATTTTTTCAAGGCTAATTGTGACCTCAGATGGTCAACTGCAGCGCCTTGCATGGATACAAAGTAGCCAGACTTGGAACAAGTTTTGGTATGCACCTAAGGATCAGTGTGATGTTTATAGAGAGTGTGGTCCTTATGGTATATGTGACTCTAATGCTTCACCGGTTTGTGAGTGTGTGAGAGGGTTCAAGCCTAAAAATCAGCAGGCTTGGAATTTAAGAGATGGGTCTGATGGGTGTGTGAGGAACACAAATTTGGAATGTGTGAGTGACAAGTTTTTGCATATGCAGAACGTGAAGTTGCCTGAGACAACTACTGCCTTTGTGAATAGGAGCATGACCCTTGTGGAATGTGAAGATTTGTGCCACAGGAATTGTTCTTGCACTGCTTATGCCAACATTGAGATTACAAATGGAGGAACTGGTTGTGTGATGTGGATCGGTGAACTCATAGACATGAGGCAGTATTCTGATGGTGGGCAAGATCTTTATCTCAGATTAGCAGCTTCTGATGTAGATGACTTAGCATCTGCAGGTGGCTCTCACAAGACAAATGATACAGGTAAGGTTGTAGGAATTACACTTTCAGCCGCTGTTATAATTTTGGGATTGGGTTTCTTATCATGGAAGAAGAGGAAATTGCTATTGAATGGGAACACGGACCGCAGAGGTTCTTTGCAAAGAAGTCAGGACTTGCTAATGAATGAGGTGGTGTTTTCAAGTAAAAGAGAAAACTCAGGAGAAAGGAACATGGATGACCTAGAGTTACCAATATTTGATTTTAATACCATAACAATGGCTACAAATAACTTCTCTGAAGCAAATAAACTTGGACAAGGTGGCTTCGGTATTGTTTACAGGGGCAGGCTGATGGAAGGCCAAGAAATTGCTGTCAAGAGGTTATCAAAAACCTCAGGGCAAGGAAATGAAGAATTTAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTATTTGGTTGCTGCATTGATATGGATGAGAAGCTGCTGGTGTATGAATACATGGAAAATAGAGGCCTTGATTCCATTTTGTTTGACAAAGCCAAAAGACCCTTACTGAACTGGAGAAGACGCTTCAGCATAATATGCGGAATAGCTAGAGGGCTTCTTTATCTTCATCATGATTCCAGATTCAGGATTATCCATAGGGATCTCAAGGCAAGCAACATTCTACTTGACAGTGAAATGAACCCAAAGATATCAGACTTTGGGATGGCTAGAATTTTTGGCACAGATCAGACAGAAGCAAATACATTGAGAGTTGTTGGAACATATGGCTATATGGCTCCTGAATATGCTATGGATGGGAACTTCTCAGTGAAATCTGATGTTTTTAGCTTTGGAGTTCTAGTGCTGGAGATCATAAGTGGAAAGAAGAATAGAGGATTCTATTACTCAAACAATGAATTGAATCTTCTAGCGAATGTATGGAAGCAGTGGAAAGAAGGCAGTGCATTGGAACTCATTGATCCATCAATTGGTGAATCATATTCACCATCTGAAGTTCTTAGATGCATACACGTTGGACTCTTATGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGTCTTCAGTGATCTTGATGCTGAGTAGTGAGACTTCACTAATGCCACAACCAAGAAACCCTGGATTTTCCGTTGGGAGGAATCCTGGGGAGACCGATTCTTCTTCAAGTAAGCAAGATGAACCGTGGAGTGTGAACCAAGTCACTGTCACATTGCTAGATGCTAGGTAG 2541 0.4191 MGGFTNLLRFSLFWFLTSLTFFTTISISADTLTTTQILRTNQTLISQNETFVLGFFPGSDSNWYVGIWYKNIDDRTLVWVANRDNPLEDSTGFLMIGDKGNIVIDNPSGNPVWSSNQTTANNPIVQLLDSGNLVVKEANLSDPTKYLWQSFDYPTDTLVPGMKMGWNLDTGMEKHITSWKNTGQDPSTGGYSFKIDYHGLPEIFLRNNQNITYRSGPWNGERFSGVPEMEPDTDSIVFTFSEDEHGVYYSFSIGNQSIFSRLIVTSDGQLQRLAWIQSSQTWNKFWYAPKDQCDVYRECGPYGICDSNASPVCECVRGFKPKNQQAWNLRDGSDGCVRNTNLECVSDKFLHMQNVKLPETTTAFVNRSMTLVECEDLCHRNCSCTAYANIEITNGGTGCVMWIGELIDMRQYSDGGQDLYLRLAASDVDDLASAGGSHKTNDTGKVVGITLSAAVIILGLGFLSWKKRKLLLNGNTDRRGSLQRSQDLLMNEVVFSSKRENSGERNMDDLELPIFDFNTITMATNNFSEANKLGQGGFGIVYRGRLMEGQEIAVKRLSKTSGQGNEEFKNEVKLIVKLQHRNLVRLFGCCIDMDEKLLVYEYMENRGLDSILFDKAKRPLLNWRRRFSIICGIARGLLYLHHDSRFRIIHRDLKASNILLDSEMNPKISDFGMARIFGTDQTEANTLRVVGTYGYMAPEYAMDGNFSVKSDVFSFGVLVLEIISGKKNRGFYYSNNELNLLANVWKQWKEGSALELIDPSIGESYSPSEVLRCIHVGLLCVQERAEDRPTMSSVILMLSSETSLMPQPRNPGFSVGRNPGETDSSSSKQDEPWSVNQVTVTLLDAR 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00020 846 Pfam Receptor serine/threonine kinase 483 517 IPR022126 GO:0004674
Gabi2880g00020 846 Pfam D-mannose binding lectin 76 180 IPR001480 -
Gabi2880g00020 846 SMART serkin_6 527 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00020 846 SUPERFAMILY Protein kinase-like (PK-like) 507 798 IPR011009 -
Gabi2880g00020 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 789 - -
Gabi2880g00020 846 SMART ntp_6 344 423 IPR003609 -
Gabi2880g00020 846 PIRSF SRK 4 846 IPR024171 GO:0004674
Gabi2880g00020 846 Pfam Protein tyrosine and serine/threonine kinase 530 795 IPR001245 GO:0004672|GO:0006468
Gabi2880g00020 846 CDD STKc_IRAK 533 798 - -
Gabi2880g00020 846 CDD PAN_AP_plant 340 424 - -
Gabi2880g00020 846 Gene3D Phosphorylase Kinase; domain 1 501 602 - -
Gabi2880g00020 846 ProSitePatterns Protein kinases ATP-binding region signature. 533 555 IPR017441 GO:0005524
Gabi2880g00020 846 Pfam PAN-like domain 344 409 IPR003609 -
Gabi2880g00020 846 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Gabi2880g00020 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 151 - -
Gabi2880g00020 846 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Gabi2880g00020 846 ProSiteProfiles Protein kinase domain profile. 527 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00020 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 220 IPR036426 -
Gabi2880g00020 846 Gene3D - 23 151 IPR036426 -
Gabi2880g00020 846 CDD B_lectin 35 154 IPR001480 -
Gabi2880g00020 846 Gene3D Hepatocyte Growth Factor 341 423 - -
Gabi2880g00020 846 SMART blect_4 35 154 IPR001480 -
Gabi2880g00020 846 Pfam Domain of unknown function (DUF3403) 800 846 IPR021820 GO:0004674
Gabi2880g00020 846 MobiDBLite consensus disorder prediction 803 838 - -
Gabi2880g00020 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Gabi2880g00020 846 MobiDBLite consensus disorder prediction 817 838 - -
Gabi2880g00020 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 603 806 - -
Gabi2880g00020 846 Gene3D Transferase(Phosphotransferase) domain 1 603 807 - -
Gabi2880g00020 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 491 602 - -
Gabi2880g00020 846 ProSiteProfiles PAN/Apple domain profile. 344 424 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00020 Gabi-Chr2880 131310 136671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00020 515 846 Receptor kinase-like Gene Family AT4G11530 59.347 2.26e-136 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00020 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00020 - - gmx:100797331 1354.35