Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00019 ATGGGAGGTTTCACCAACCTCCTCCGTTTCTCCCTCTTTTGGTTCTTAACTTCGCTCACTTTTTTCACCACAATTTCAATCTCTGCAGATACCTTAACTACAACACAAATTCTCAGAACCAACCAAACCCTTATATCCCAAAACGAAACCTTCGTTCTGGGCTTCTTTCCTGGGAGCGATTCCAACTGGTATGTGGGCATATGGTACAAGAACATTGATGATAGAACACTGGTTTGGGTGGCAAACAGAGACAACCCACTTGAGGACTCCACAGGATTTCTCATGATTGGAGACAAAGGAAACATAGTTATTGACAATCCATCAGGTAACCCTGTATGGTCCTCGAATCAAACCACAGCTAATAACCCAATTGTTCAGCTTTTGGATTCTGGGAATTTAGTTGTGAAAGAAGCAAACTTGAGTGACCCCACCAAGTATCTATGGCAAAGCTTCGATTACCCAACAGATACACTGGTACCTGGCATGAAGATGGGGTGGAACTTGGACACAGGCATGGAGAAGCACATAACATCTTGGAAGAACACAGGACAAGACCCTTCAACAGGAGGTTATTCTTTCAAGATAGATTATCATGGACTACCAGAAATTTTCCTGAGGAACAATCAGAACATAACATACAGGAGTGGTCCTTGGAATGGTGAGAGATTCAGCGGGGTACCAGAGATGGAACCCGATACAGATTCTATTGTATTCACGTTTTCTGAAGATGAACATGGGGTATACTACTCATTTTCCATTGGGAACCAATCCATTTTTTCAAGGCTAATTGTGACCTCAGATGGTCAACTGCAGCGCCTTGCATGGATACAAAGTAGCCAGACTTGGAACAAGTTTTGGTATGCACCTAAGGATCAGTGTGATGTTTATAGAGAGTGTGGTCCTTATGGTATATGTGACTCTAATGCTTCACCGGTTTGTGAGTGTGTGAGAGGGTTCAAGCCTAAAAATCAGCAGGCTTGGAATTTAAGAGATGGGTCTGATGGGTGTGTGAGGAACACAAATTTGGAATGTGTGAGTGACAAGTTTTTGCATATGCAGAACGTGAAGTTGCCTGAGACAACTACTGCCTTTGTGAATAGGAGCATGACCCTTGTGGAATGTGAAGATTTGTGCCACAGGAATTGTTCTTGCACTGCTTATGCCAACATTGAGATTACAAATGGAGGAACTGGTTGTGTGATGTGGATCGGTGAACTCATAGACATGAGGCAGTATTCTGATGGTGGGCAAGATCTTTATCTCAGATTAGCAGCTTCTGATGTAGGTGGCTCTCACAAGACAAATGATACAGGTAAGGTTGTAGGAATTACACTTTCAGCCGCTGTTATAATTTTGGGATTGGGTTTCTTATCATGGAAGAAGAGGAAATTGCTATTGAATGGGAACACGGACCGCAGAGGTTCTTTGCAAAGAAGTCAGGACTTGCTAATGAATGAGGTGGTGTTTTCAAGTAAAAGAGAAAACTCAGGAGAAAGGAACATGGATGACCTAGAGTTACCAATATTTGATTTTAATACCATAACAATGGCTACAAATAACTTCTCTGAAGCAAATAAACTTGGACAAGGTGGCTTCGGTATTGTTTACAGGGGCAGGCTGATGGAAGGCCAAGAAATTGCTGTCAAGAGGTTATCAAAAACCTCAGGGCAAGGAAATGAAGAATTTAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTATTTGGTTGCTGCATTGATATGGATGAGAAGCTGCTGGTGTATGAATACATGGAAAATAGAGGCCTTGATTCCATTTTGTTTGACAAAGCCAAAAGACCCTTACTGAACTGGAGAAGACGCTTCAGCATAATATGCGGAATAGCTAGAGGGCTTCTTTATCTTCATCATGATTCCAGATTCAGGATTATCCATAGGGATCTCAAGGCAAGCAACATTCTACTTGACAGTGAAATGAACCCAAAGATATCAGACTTTGGGATGGCTAGAATTTTTGGCACAGATCAGACAGAAGCAAATACATTGAGAGTTGTTGGAACATATGGCTATATGGCTCCTGAATATGCTATGGATGGGAACTTCTCAGTGAAATCTGATGTTTTTAGCTTTGGAGTTCTAGTGCTGGAGATCATAAGTGGAAAGAAGAATAGAGGATTCTATTACTCAAACAATGAATTGAATCTTCTAGCGAATGTATGGAAGCAGTGGAAAGAAGGCAGTGCATTGGAACTCATTGATCCATCAATTGGTGAATCATATTCACCATCTGAAGTTCTTAGATGCATACACGTTGGACTCTTATGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGTCTTCAGTGATCTTGATGCTGAGTAGTGAGACTTCACTAATGCCACAACCAAGAAACCCTGGATTTTCCGTTGGGAGGAATCCTGGGGAGACCGATTCTTCTTCAAGTAAGCAAGATGAACCGTGGAGTGTGAACCAAGTCACTGTCACATTGCTAGATGCTAGGTAG 2523 0.4189 MGGFTNLLRFSLFWFLTSLTFFTTISISADTLTTTQILRTNQTLISQNETFVLGFFPGSDSNWYVGIWYKNIDDRTLVWVANRDNPLEDSTGFLMIGDKGNIVIDNPSGNPVWSSNQTTANNPIVQLLDSGNLVVKEANLSDPTKYLWQSFDYPTDTLVPGMKMGWNLDTGMEKHITSWKNTGQDPSTGGYSFKIDYHGLPEIFLRNNQNITYRSGPWNGERFSGVPEMEPDTDSIVFTFSEDEHGVYYSFSIGNQSIFSRLIVTSDGQLQRLAWIQSSQTWNKFWYAPKDQCDVYRECGPYGICDSNASPVCECVRGFKPKNQQAWNLRDGSDGCVRNTNLECVSDKFLHMQNVKLPETTTAFVNRSMTLVECEDLCHRNCSCTAYANIEITNGGTGCVMWIGELIDMRQYSDGGQDLYLRLAASDVGGSHKTNDTGKVVGITLSAAVIILGLGFLSWKKRKLLLNGNTDRRGSLQRSQDLLMNEVVFSSKRENSGERNMDDLELPIFDFNTITMATNNFSEANKLGQGGFGIVYRGRLMEGQEIAVKRLSKTSGQGNEEFKNEVKLIVKLQHRNLVRLFGCCIDMDEKLLVYEYMENRGLDSILFDKAKRPLLNWRRRFSIICGIARGLLYLHHDSRFRIIHRDLKASNILLDSEMNPKISDFGMARIFGTDQTEANTLRVVGTYGYMAPEYAMDGNFSVKSDVFSFGVLVLEIISGKKNRGFYYSNNELNLLANVWKQWKEGSALELIDPSIGESYSPSEVLRCIHVGLLCVQERAEDRPTMSSVILMLSSETSLMPQPRNPGFSVGRNPGETDSSSSKQDEPWSVNQVTVTLLDAR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00019 840 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 783 - -
Gabi2880g00019 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 800 - -
Gabi2880g00019 840 Gene3D Phosphorylase Kinase; domain 1 495 596 - -
Gabi2880g00019 840 PIRSF SRK 4 840 IPR024171 GO:0004674
Gabi2880g00019 840 SMART ntp_6 344 423 IPR003609 -
Gabi2880g00019 840 CDD PAN_AP_plant 340 424 - -
Gabi2880g00019 840 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Gabi2880g00019 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 151 - -
Gabi2880g00019 840 SMART serkin_6 521 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00019 840 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Gabi2880g00019 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Gabi2880g00019 840 Pfam PAN-like domain 344 409 IPR003609 -
Gabi2880g00019 840 CDD B_lectin 35 154 IPR001480 -
Gabi2880g00019 840 Gene3D Transferase(Phosphotransferase) domain 1 597 801 - -
Gabi2880g00019 840 Gene3D Hepatocyte Growth Factor 341 423 - -
Gabi2880g00019 840 SMART blect_4 35 154 IPR001480 -
Gabi2880g00019 840 SUPERFAMILY Protein kinase-like (PK-like) 501 792 IPR011009 -
Gabi2880g00019 840 MobiDBLite consensus disorder prediction 797 832 - -
Gabi2880g00019 840 CDD STKc_IRAK 527 792 - -
Gabi2880g00019 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 485 596 - -
Gabi2880g00019 840 Pfam Domain of unknown function (DUF3403) 794 840 IPR021820 GO:0004674
Gabi2880g00019 840 Gene3D - 23 151 IPR036426 -
Gabi2880g00019 840 MobiDBLite consensus disorder prediction 811 832 - -
Gabi2880g00019 840 ProSiteProfiles Protein kinase domain profile. 521 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00019 840 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Gabi2880g00019 840 Pfam D-mannose binding lectin 76 180 IPR001480 -
Gabi2880g00019 840 Pfam Receptor serine/threonine kinase 477 511 IPR022126 GO:0004674
Gabi2880g00019 840 Pfam Protein tyrosine and serine/threonine kinase 524 789 IPR001245 GO:0004672|GO:0006468
Gabi2880g00019 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 220 IPR036426 -
Gabi2880g00019 840 ProSiteProfiles PAN/Apple domain profile. 344 424 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00019 Gabi-Chr2880 131310 136671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00019 509 840 Receptor kinase-like Gene Family AT4G11530 59.347 1.84e-136 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00019 PK_Tyr_Ser-Thr 6.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00019 - - gmx:100797331 1356.27