Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00018 ATGAATAAAGTTCTCATTGTTATATTTGTTTTTGCTTGTCTATTTGTCCTTCAAAAAATGTCATATGCAGCTGATACCTTGACTCCAACATCATCCATTATAGATGGACAACAACTCATTTCTGTTGGTCAAAATTTTTCTCTTGGATTCTTCAGTCCAGGAAGCTCCAAAAGCCGCTACATAGGGATATGGTACAATAATATTATGCCTCAAACAGTTGTTTGGGTTGCAAACAGAGAGAATCCACTAAATGACTCACGTGGAAACTTAACCATTGGTGCTGATGGGAATATTGTACTAGTTGATGGAGCAGATAACAGGATGTGGTCTACAAAGTCATCAAGATCAATTCAAGAGCCAATTGCAAAACTGTTAGATTCTGGAAACTTAGTCTTGATGGATGGAAAGAAGGGTGATTCTGATAGTTTTATATGGCAAAGCTTTGATTATCCAACAGACACAATGTTACCAGGCATGAAATTAGGTTGGGATAAGACCTCAGGGCTCAACAGATATTTGACTTCTTGGAAGAGTGCTAATGACCCCTCTCCTGGAAGCTTTATCTACAGCTTTGATCACAAAGATTTTCCTGAGTTGGTAATCCGCCAGGGAATGAACATCACATTCAGAAGTGGGATTTGGGATGGCATTCATTTTAATTCAGATGATTGGATATCATTTACTGGAATTACAGCTTTCAGGCCACAACTTTCAGTAACCAATGATGAGGTAGTTTATTGGGATGAACCTGGAGATAGATTAACAAGGTTTATGCTGAGGGATGATGGACTTCTTGAAAGATATATGTGGGACAACAAAATTCTTAAGTGGACTAATTTGTATGAGGCAAGAAAAGACTTTTGTGATAACTATGGAGCATGTGGGATGAATGGTGTTTGCAGTATTAAGGAAGTACCTGCTTACTGTGATTGCTTGAAAGGCTTCATACCTAAATCACAGCAAGAATGGGATTCATTTGATCGGTCTGGTGGTTGCATAAGGAGAACACCCTTAAACTGCACACAAGGTGACGAGTTTCAGAAATTGAGCTGGGTGAAATTGCCCATGTTGTTGCAATTCTGGACAAATAATAGCATGAGTCTTGAAGACTGTAACATGGAATGCTTGAAGAATTGCTCTTGCACCGCTTATGCGAATTCAGCCATGAATGAAGGGCCCCATGGCTGTTTGCTTTGGTTTGGGGACTTGATTGACATTAGGCTGCTTTTAAGTGAAGAGGGTGAACAACTGGATCTTTATGTAAGGTTAGCCGCTTCAGAAATAGAGTCCACTGCTAATACTGGTAAAAGGACAAAGATGGCACTGATTATTTCAGCACCTTTGGCACTGCTTCTTTTGTGTACCATTTTCTACCTTTCTAAGAAGTATACAAAACGGAGGACTACAACCGATTTGGGACGTAGAAATCAGAATGAAAATCAAGCGTCGCCTCTTTTTGATATAGATGCTATTCTAGCTGCTACAAACAATTTTTCTGTTGAGAACAAGATTGGGGAAGGTGGTTTTGGTCCAGTATACAAGGGTAAATTGGCTCATGGACAAGAAATAGCTGTGAAGAGGCTATCAAAAACCTCAAAACAAGGCATCTCAGAGTTTATGAATGAAGTTGGATTGGTAGCCAAACTTCAACACCGCAATCTTGTGAGTGTTTTGGGTGGGTGCACTCAAGGAGAAGAAAGAATGTTGGTTTATGAATACATGCCTAATAGTAGTTTGGACCACTTCATTTTTGATCCTATACAAGGAAAATTTTTGAAGTGGAGGAAACGATATGAAATTATTATGGGGATTGCACGAGGACTACTTTATCTTCATCAAGATTCAAAACTAACCATCATTCATAGGGATCTAAAAACAAGTAACATTCTACTTGACCACGAATTGAACCCCAAGATTTCTGATTTTGGTGTTGCTCACATCTTTGAAGGAGATCAAGCTGCAGTAACAACAAATAAAATTGTTGGGACAATTGGTTATATGTCCCCTGAGTATGCAGTAAATGGGCTACTTTCCCTAAAGTCTGATGTATTTAGCTTTGGAGTTATAGTGTTAGAGATATTGAGTGGCATCAGAAATAGTAGCTACAACCATCAAGATCATCACCAAAATCTGTTGGGGCAGGCATGGACATTATGGAAAGAGGGACGAGCTGTGGAAATTATGGATGTTAATTTGGACCTAACAGCTATTCCATCTGAATTACTTAGGTGCCTGCAAGTAGGTCTCTTGTGTGTTCAAAAGTTCCCTGAAGACAGACCAACTATGTCATCTGTGGTTTTCATGTTAGGCAATGAAAGTATTGCACTTGCCCACCCAAAGAAACCCGGTTTCTTTGATGAAGAGTTAGAGTTTCGTGAGTACACCGAGGAGGACTGTTTTAGCAACAATGCTATGACTATTACGCTATTGGAAGCTCGAAATTAG 2445 0.3935 MNKVLIVIFVFACLFVLQKMSYAADTLTPTSSIIDGQQLISVGQNFSLGFFSPGSSKSRYIGIWYNNIMPQTVVWVANRENPLNDSRGNLTIGADGNIVLVDGADNRMWSTKSSRSIQEPIAKLLDSGNLVLMDGKKGDSDSFIWQSFDYPTDTMLPGMKLGWDKTSGLNRYLTSWKSANDPSPGSFIYSFDHKDFPELVIRQGMNITFRSGIWDGIHFNSDDWISFTGITAFRPQLSVTNDEVVYWDEPGDRLTRFMLRDDGLLERYMWDNKILKWTNLYEARKDFCDNYGACGMNGVCSIKEVPAYCDCLKGFIPKSQQEWDSFDRSGGCIRRTPLNCTQGDEFQKLSWVKLPMLLQFWTNNSMSLEDCNMECLKNCSCTAYANSAMNEGPHGCLLWFGDLIDIRLLLSEEGEQLDLYVRLAASEIESTANTGKRTKMALIISAPLALLLLCTIFYLSKKYTKRRTTTDLGRRNQNENQASPLFDIDAILAATNNFSVENKIGEGGFGPVYKGKLAHGQEIAVKRLSKTSKQGISEFMNEVGLVAKLQHRNLVSVLGGCTQGEERMLVYEYMPNSSLDHFIFDPIQGKFLKWRKRYEIIMGIARGLLYLHQDSKLTIIHRDLKTSNILLDHELNPKISDFGVAHIFEGDQAAVTTNKIVGTIGYMSPEYAVNGLLSLKSDVFSFGVIVLEILSGIRNSSYNHQDHHQNLLGQAWTLWKEGRAVEIMDVNLDLTAIPSELLRCLQVGLLCVQKFPEDRPTMSSVVFMLGNESIALAHPKKPGFFDEELEFREYTEEDCFSNNAMTITLLEARN 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00018 814 Pfam D-mannose binding lectin 72 177 IPR001480 -
Gabi2880g00018 814 Gene3D Phosphorylase Kinase; domain 1 458 573 - -
Gabi2880g00018 814 SMART serkin_6 498 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00018 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Gabi2880g00018 814 ProSiteProfiles Protein kinase domain profile. 498 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00018 814 SMART blect_4 30 151 IPR001480 -
Gabi2880g00018 814 SUPERFAMILY Protein kinase-like (PK-like) 482 769 IPR011009 -
Gabi2880g00018 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 460 573 - -
Gabi2880g00018 814 ProSiteProfiles PAN/Apple domain profile. 340 424 IPR003609 -
Gabi2880g00018 814 CDD B_lectin 30 151 IPR001480 -
Gabi2880g00018 814 Pfam S-locus glycoprotein domain 209 319 IPR000858 GO:0048544
Gabi2880g00018 814 Gene3D Transferase(Phosphotransferase) domain 1 574 778 - -
Gabi2880g00018 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 760 - -
Gabi2880g00018 814 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Gabi2880g00018 814 SMART ntp_6 341 423 IPR003609 -
Gabi2880g00018 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 574 777 - -
Gabi2880g00018 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 148 - -
Gabi2880g00018 814 Pfam Protein tyrosine and serine/threonine kinase 500 766 IPR001245 GO:0004672|GO:0006468
Gabi2880g00018 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Gabi2880g00018 814 CDD STKc_IRAK 504 769 - -
Gabi2880g00018 814 PIRSF SRK 1 813 IPR024171 GO:0004674
Gabi2880g00018 814 Gene3D - 18 148 IPR036426 -
Gabi2880g00018 814 Pfam PAN-like domain 340 406 IPR003609 -
Gabi2880g00018 814 CDD PAN_AP_plant 336 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00018 Gabi-Chr2880 127208 130615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00018 450 785 Receptor kinase-like Gene Family AT4G23150 53.571 5.22e-117 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00018 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00018 - - gmx:102669607 1384.78