Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00016 ATGAGAGGTTCTATTAACCTCCATATCTACTTCTTTTGGAGCTTCACTTTATTCAGTTTCTTTTCCAATATTGTAACATCTGTGAATACCTTAACTGCAATCCAATCTCTTGAAATTAACCAAACCCTTGTATCTCCCAATCAAGTGTTTGAGTTTGGCTTCTTTAGACCAAGCACCTCTAGATGGTACTTGGGTATATGGTACAAGGACATTCCTGAGAGAATAGTGGTTTGGGTTGCAAACAGAGACACCCCACTTGAAAATTCCAATGGAACTCTCAAGATTGGAGACAATGGAGACCTTGTTCTTCTCAATCAAACAGGTAAATCCATATGGTCATCAAATGAAACCACTGCTACTAACCCAGTTATTCAGATTTTGGATAGTGGGAATTTGATTCTAATAGAAGCAAACGAGAAAAACACAAGCAACTATCTGTGGCAGAGCTTTGATTATCCCACAGATACTTTGTTACCAGGTATGAAGCTAGGTAGGAACCTGGAAACTGGCATGGAGCACCGTTTAACATCATGGAAAAGCCTTGATGATCCATCAAGTGGAGATTTTTCCTACAGGATGGAATATCACGGGCTTCCTGAATTTTTCTTAAGGAACAAACAGATCAAGGAATATCGAAGTGGGCCATGGAATGGTTTGATATTCAGCGCATTACCAGTTCTGAGCTCAAATTTTATTCTTCAAGATAACATGTCTTTCGATGCAACGGAAGTATACTACTTCATTTCAAAGGTCAATAATTCAAAGCATACTAGACTTGCAATGAACTGGACAGGTGAAATCCAACGCCATGTATGGGTAGAAAGCAGCCAAAGTTGGAACAAATTATGGTATGCACCTAATGATGAATGTGACAAATATGTTAGGTGTGGTCCATTTGGTATCTGTGATTCAAGTGCTTTCCCGGTATGCAGCTGTATTCAAGGGTTCCATGCAAAAAATCAGGTGGAATGGAATTTGAGAGACTTTTCTGAGGGGTGTGTGAGAAACACAGGACTGGATTGTGGGAAGGACAAGTTTCTGCGTGTGCAGCATGTGGAACTACCAGAAACAACGATAGTTTTTGTGAACATGAGCATGACACTTAATGATTGTGAAGATATGTGCATGAAAAATTGTTCTTGCACTGCTTTTGCAAACGTGGAGATTACTAATGGAGGGACTGGTTGTGTAATGTGGACTGATGAGCTCTTAGACATGAGGCAGTTTGCTGCTGGTGGCCAAGATCTTTATGTCAGATTAGCAGCTTCTGATGTTGTAGATCACACAGGATCTGCTGGTAGCTCTGACAAGAAAAATAATGTAGGTAGGGTTGTCGGCATTACAGTTACTACAGCTACTGTGATTTTGGGAGTGAGCATGTATTGTTTATGGAAGAGGAGAAAATTGCAAAGTATTTGGAAATGGAAAACCATACAGAAAGGTATTACAAAATTAAAGTCCATCATTAGAAATCAGCATCCTGAGGTAACATTTAGAGATCCCTCAGGTGAAAGGAATATGGATGACCTGGAGTTGCCCTTGTTTGATTTCAATACCATAACAATGGCTACAAACAACTTCTCAGAAGCAAATGAACTCGGACAAGGAGGTTTTGGCTGTGTTTATAGGGGTAGGTTAGTTGATGGTCAAGAGATAGCTGTGAAAAGGTTATCAAAAACCTCTGGGCAAGGAATAGAAGAATTCAAGAATGAGGTCAAGTCAATTGCAAAGCTTCAACATAGAAATCTTGTACGACTGTTTGGTTGTTGCGTTGAGAAGGATGAGCAGATGTTGGTCTACGAATACATGGAAAATAACAGCCTAGACTCTATTTTATTTGACAAAGCCAAATGCTCCTTACTAGATTGGCAAATACGCTTCAACATTATATGTGGAATAGCTAGAGGGCTTCTTTATCTCCACCAAGATTCCAGGCTTAGAATTATCCACAGGGATCTCAAGGGAAGCAATGTTCTACTTGATAGAGAAATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAATTTTCGGCAGTGATCAAACACAAGCAAATACAAGGAGAGTTGTTGGAACATATGGCTATATGTCACCTGAATATGCAATGGACGGGCTCTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTGGTGCTAGAGATCATAAGTGGCAAAAAGAATAGAGGATTTTATTTATCAGAAGAGTCAAATCTTCTTGGAAATTCATGGAAGCACTGGAAAGAAGGGAAGGCATTGGAACTGATAGATTCATCATTTGCTAATTCCTATTCAGCATCGGAAGTTTTGAGATGCATACATGTTGGCCTCATATGTGTCCAAGAACGAGCAGAAGATAGGCCAACAATATCTTCTGTGGTCTTGATGTTGGGTAGTGAAACTGCATCAATGCCACAGCCTAAAAACCCTGGTTTTGTCCTTGGAAAGAGTCCTACTGATACTGACTCTTCAGCTAAGCAAGAAGAATCATACACAGTGAACCAAGTCACAATCACAGATGTAGATGCTCGGTAG 2535 0.3988 MRGSINLHIYFFWSFTLFSFFSNIVTSVNTLTAIQSLEINQTLVSPNQVFEFGFFRPSTSRWYLGIWYKDIPERIVVWVANRDTPLENSNGTLKIGDNGDLVLLNQTGKSIWSSNETTATNPVIQILDSGNLILIEANEKNTSNYLWQSFDYPTDTLLPGMKLGRNLETGMEHRLTSWKSLDDPSSGDFSYRMEYHGLPEFFLRNKQIKEYRSGPWNGLIFSALPVLSSNFILQDNMSFDATEVYYFISKVNNSKHTRLAMNWTGEIQRHVWVESSQSWNKLWYAPNDECDKYVRCGPFGICDSSAFPVCSCIQGFHAKNQVEWNLRDFSEGCVRNTGLDCGKDKFLRVQHVELPETTIVFVNMSMTLNDCEDMCMKNCSCTAFANVEITNGGTGCVMWTDELLDMRQFAAGGQDLYVRLAASDVVDHTGSAGSSDKKNNVGRVVGITVTTATVILGVSMYCLWKRRKLQSIWKWKTIQKGITKLKSIIRNQHPEVTFRDPSGERNMDDLELPLFDFNTITMATNNFSEANELGQGGFGCVYRGRLVDGQEIAVKRLSKTSGQGIEEFKNEVKSIAKLQHRNLVRLFGCCVEKDEQMLVYEYMENNSLDSILFDKAKCSLLDWQIRFNIICGIARGLLYLHQDSRLRIIHRDLKGSNVLLDREMNPKISDFGMARIFGSDQTQANTRRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIISGKKNRGFYLSEESNLLGNSWKHWKEGKALELIDSSFANSYSASEVLRCIHVGLICVQERAEDRPTISSVVLMLGSETASMPQPKNPGFVLGKSPTDTDSSAKQEESYTVNQVTITDVDAR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00016 844 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 788 - -
Gabi2880g00016 844 Pfam Protein tyrosine and serine/threonine kinase 530 795 IPR001245 GO:0004672|GO:0006468
Gabi2880g00016 844 Pfam D-mannose binding lectin 76 179 IPR001480 -
Gabi2880g00016 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 492 602 - -
Gabi2880g00016 844 CDD PAN_AP_plant 339 421 - -
Gabi2880g00016 844 SUPERFAMILY Protein kinase-like (PK-like) 510 797 IPR011009 -
Gabi2880g00016 844 ProSitePatterns Protein kinases ATP-binding region signature. 533 555 IPR017441 GO:0005524
Gabi2880g00016 844 SMART serkin_6 527 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00016 844 Gene3D Transferase(Phosphotransferase) domain 1 603 808 - -
Gabi2880g00016 844 Gene3D Hepatocyte Growth Factor 340 419 - -
Gabi2880g00016 844 PIRSF SRK 3 844 IPR024171 GO:0004674
Gabi2880g00016 844 ProSiteProfiles Protein kinase domain profile. 527 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00016 844 CDD STKc_IRAK 533 797 - -
Gabi2880g00016 844 SMART ntp_6 341 420 IPR003609 -
Gabi2880g00016 844 Pfam Domain of unknown function (DUF3403) 799 844 IPR021820 GO:0004674
Gabi2880g00016 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 184 IPR036426 -
Gabi2880g00016 844 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Gabi2880g00016 844 Pfam PAN-like domain 341 406 IPR003609 -
Gabi2880g00016 844 MobiDBLite consensus disorder prediction 816 831 - -
Gabi2880g00016 844 SMART blect_4 34 153 IPR001480 -
Gabi2880g00016 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Gabi2880g00016 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 150 - -
Gabi2880g00016 844 Gene3D - 22 150 IPR036426 -
Gabi2880g00016 844 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Gabi2880g00016 844 CDD B_lectin 35 153 IPR001480 -
Gabi2880g00016 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 603 805 - -
Gabi2880g00016 844 FunFam Os04g0303100 protein 67 209 - -
Gabi2880g00016 844 Gene3D Phosphorylase Kinase; domain 1 503 602 - -
Gabi2880g00016 844 MobiDBLite consensus disorder prediction 806 831 - -
Gabi2880g00016 844 ProSiteProfiles PAN/Apple domain profile. 341 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00016 Gabi-Chr2880 106645 110230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00016 515 844 Receptor kinase-like Gene Family AT4G11530 58.160 6.96e-132 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00016 PK_Tyr_Ser-Thr 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00016 - - aip:107621503 1264.6