Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00015 ATGAGAGGTTCTATTAACCTCCATATCTACTTCTTTTGGAGCTTCACTTTATTCAGTTTCTTTTCCAATATTGTAACATCTGTGAATACCTTAACTGCAATCCAATCTCTTGAAATTAACCAAACCCTTGTATCTCCCAATCAAGTGTTTGAGTTTGGCTTCTTTAGACCAAGCACCTCTAGATGGTACTTGGGTATATGGTACAAGGACATTCCTGAGAGAATAGTGGTTTGGGTTGCAAACAGAGACACCCCACTTGAAAATTCCAATGGAACTCTCAAGATTGGAGACAATGGAGACCTTGTTCTTCTCAATCAAACAGGTAAATCCATATGGTCATCAAATGAAACCACTGCTACTAACCCAGTTATTCAGATTTTGGATAGTGGGAATTTGATTCTAATAGAAGCAAACGAGAAAAACACAAGCAACTATCTGTGGCAGAGCTTTGATTATCCCACAGATACTTTGTTACCAGGTATGAAGCTAGGTAGGAACCTGGAAACTGGCATGGAGCACCGTTTAACATCATGGAAAAGCCTTGATGATCCATCAAGTGGAGATTTTTCCTACAGGATGGAATATCACGGGCTTCCTGAATTTTTCTTAAGGAACAAACAGATCAAGGAATATCGAAGTGGGCCATGGAATGGTTTGATATTCAGCGCATTACCAGTTCTGAGCTCAAATTTTATTCTTCAAGATAACATGTCTTTCGATGCAACGGAAGTATACTACTTCATTTCAAAGGTCAATAATTCAAAGCATACTAGACTTGCAATGAACTGGACAGGTGAAATCCAACGCCATGTATGGGTAGAAAGCAGCCAAAGTTGGAACAAATTATGGTATGCACCTAATGATGAATGTGACAAATATGTTAGGTGTGGTCCATTTGGTATCTGTGATTCAAGTGCTTTCCCGGTATGCAGCTGTATTCAAGGGTTCCATGCAAAAAATCAGGTGGAATGGAATTTGAGAGACTTTTCTGAGGGGTGTGTGAGAAACACAGGACTGGATTGTGGGAAGGACAAGTTTCTGCGTGTGCAGCATGTGGAACTACCAGAAACAACGATAGTTTTTGTGAACATGAGCATGACACTTAATGATTGTGAAGATATGTGCATGAAAAATTGTTCTTGCACTGCTTTTGCAAACGTGGAGATTACTAATGGAGGGACTGGTTGTGTAATGTGGACTGATGAGCTCTTAGACATGAGGCAGTTTGCTGCTGGTGGCCAAGATCTTTATGTCAGATTAGCAGCTTCTGATGTTGTAGATGAAGATCACACAGGATCTGCTGGTAGCTCTGACAAGAAAAATAATGTAGGTAGGGTTGTCGGCATTACAGTTACTACAGCTACTGTGATTTTGGGAGTGAGCATGTATTGTTTATGGAAGAGGAGAAAATTGCAAAGTATTTGGAAATGGAAAACCATACAGAAAGAAGCTTTTGATAGAAATCAGCATCCTGAGGTAACATTTAGAGATCCCTCAGGTGAAAGGAATATGGATGACCTGGAGTTGCCCTTGTTTGATTTCAATACCATAACAATGGCTACAAACAACTTCTCAGAAGCAAATGAACTCGGACAAGGAGGTTTTGGCTGTGTTTATAGGGGTAGGTTAGTTGATGGTCAAGAGATAGCTGTGAAAAGGTTATCAAAAACCTCTGGGCAAGGAATAGAAGAATTCAAGAATGAGGTCAAGTCAATTGCAAAGCTTCAACATAGAAATCTTGTACGACTGTTTGGTTGTTGCGTTGAGAAGGATGAGCAGATGTTGGTCTACGAATACATGGAAAATAACAGCCTAGACTCTATTTTATTTGACAAAGCCAAATGCTCCTTACTAGATTGGCAAATACGCTTCAACATTATATGTGGAATAGCTAGAGGGCTTCTTTATCTCCACCAAGATTCCAGGCTTAGAATTATCCACAGGGATCTCAAGGGAAGCAATGTTCTACTTGATAGAGAAATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAATTTTCGGCAGTGATCAAACACAAGCAAATACAAGGAGAGTTGTTGGAACATATGGCTATATGTCACCTGAATATGCAATGGACGGGCTCTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTGGTGCTAGAGATCATAAGTGGCAAAAAGAATAGAGGATTTTATTTATCAGAAGAGTCAAATCTTCTTGGAAATTCATGGAAGCACTGGAAAGAAGGGAAGGCATTGGAACTGATAGATTCATCATTTGCTAATTCCTATTCAGCATCGGAAGTTTTGAGATGCATACATGTTGGCCTCATATGTGTCCAAGAACGAGCAGAAGATAGGCCAACAATATCTTCTGTGGTCTTGATGTTGGGTAGTGAAACTGCATCAATGCCACAGCCTAAAAACCCTGGTTTTGTCCTTGGAAAGAGTCCTACTGATACTGACTCTTCAGCTAAGCAAGAAGAATCATACACAGTGAACCAAGTCACAATCACAGATGTAGATGCTCGGTAG 2526 0.3998 MRGSINLHIYFFWSFTLFSFFSNIVTSVNTLTAIQSLEINQTLVSPNQVFEFGFFRPSTSRWYLGIWYKDIPERIVVWVANRDTPLENSNGTLKIGDNGDLVLLNQTGKSIWSSNETTATNPVIQILDSGNLILIEANEKNTSNYLWQSFDYPTDTLLPGMKLGRNLETGMEHRLTSWKSLDDPSSGDFSYRMEYHGLPEFFLRNKQIKEYRSGPWNGLIFSALPVLSSNFILQDNMSFDATEVYYFISKVNNSKHTRLAMNWTGEIQRHVWVESSQSWNKLWYAPNDECDKYVRCGPFGICDSSAFPVCSCIQGFHAKNQVEWNLRDFSEGCVRNTGLDCGKDKFLRVQHVELPETTIVFVNMSMTLNDCEDMCMKNCSCTAFANVEITNGGTGCVMWTDELLDMRQFAAGGQDLYVRLAASDVVDEDHTGSAGSSDKKNNVGRVVGITVTTATVILGVSMYCLWKRRKLQSIWKWKTIQKEAFDRNQHPEVTFRDPSGERNMDDLELPLFDFNTITMATNNFSEANELGQGGFGCVYRGRLVDGQEIAVKRLSKTSGQGIEEFKNEVKSIAKLQHRNLVRLFGCCVEKDEQMLVYEYMENNSLDSILFDKAKCSLLDWQIRFNIICGIARGLLYLHQDSRLRIIHRDLKGSNVLLDREMNPKISDFGMARIFGSDQTQANTRRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIISGKKNRGFYLSEESNLLGNSWKHWKEGKALELIDSSFANSYSASEVLRCIHVGLICVQERAEDRPTISSVVLMLGSETASMPQPKNPGFVLGKSPTDTDSSAKQEESYTVNQVTITDVDAR 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00015 841 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 785 - -
Gabi2880g00015 841 MobiDBLite consensus disorder prediction 813 828 - -
Gabi2880g00015 841 Pfam D-mannose binding lectin 76 179 IPR001480 -
Gabi2880g00015 841 Pfam Domain of unknown function (DUF3403) 796 841 IPR021820 GO:0004674
Gabi2880g00015 841 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Gabi2880g00015 841 CDD PAN_AP_plant 339 421 - -
Gabi2880g00015 841 Gene3D Transferase(Phosphotransferase) domain 1 600 805 - -
Gabi2880g00015 841 Pfam PAN-like domain 341 406 IPR003609 -
Gabi2880g00015 841 ProSiteProfiles Protein kinase domain profile. 524 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00015 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 489 599 - -
Gabi2880g00015 841 SMART serkin_6 524 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00015 841 Gene3D Phosphorylase Kinase; domain 1 500 599 - -
Gabi2880g00015 841 SMART ntp_6 341 420 IPR003609 -
Gabi2880g00015 841 Gene3D Hepatocyte Growth Factor 340 419 - -
Gabi2880g00015 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 184 IPR036426 -
Gabi2880g00015 841 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Gabi2880g00015 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Gabi2880g00015 841 MobiDBLite consensus disorder prediction 803 828 - -
Gabi2880g00015 841 SMART blect_4 34 153 IPR001480 -
Gabi2880g00015 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 150 - -
Gabi2880g00015 841 Gene3D - 22 150 IPR036426 -
Gabi2880g00015 841 SUPERFAMILY Protein kinase-like (PK-like) 507 794 IPR011009 -
Gabi2880g00015 841 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Gabi2880g00015 841 CDD B_lectin 35 153 IPR001480 -
Gabi2880g00015 841 Pfam Protein tyrosine and serine/threonine kinase 527 792 IPR001245 GO:0004672|GO:0006468
Gabi2880g00015 841 PIRSF SRK 3 841 IPR024171 GO:0004674
Gabi2880g00015 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 802 - -
Gabi2880g00015 841 ProSiteProfiles PAN/Apple domain profile. 341 421 IPR003609 -
Gabi2880g00015 841 CDD STKc_IRAK 530 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00015 Gabi-Chr2880 106645 110230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00015 429 829 Receptor kinase-like Gene Family AT4G23190 50.614 1.20e-132 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00015 PK_Tyr_Ser-Thr 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00015 - - aip:107621503 1269.22