Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00014 ATGAGAGGTTCTATTAACCTCCATATCTACTTCTTTTGGAGCTTCACTTTATTCAGTTTCTTTTCCAATATTGTAACATCTGTGAATACCTTAACTGCAATCCAATCTCTTGAAATTAACCAAACCCTTGTATCTCCCAATCAAGTGTTTGAGTTTGGCTTCTTTAGACCAAGCACCTCTAGATGGTACTTGGGTATATGGTACAAGGACATTCCTGAGAGAATAGTGGTTTGGGTTGCAAACAGAGACACCCCACTTGAAAATTCCAATGGAACTCTCAAGATTGGAGACAATGGAGACCTTGTTCTTCTCAATCAAACAGGTAAATCCATATGGTCATCAAATGAAACCACTGCTACTAACCCAGTTATTCAGATTTTGGATAGTGGGAATTTGATTCTAATAGAAGCAAACGAGAAAAACACAAGCAACTATCTGTGGCAGAGCTTTGATTATCCCACAGATACTTTGTTACCAGGTATGAAGCTAGGTAGGAACCTGGAAACTGGCATGGAGCACCGTTTAACATCATGGAAAAGCCTTGATGATCCATCAAGTGGAGATTTTTCCTACAGGATGGAATATCACGGGCTTCCTGAATTTTTCTTAAGGAACAAACAGATCAAGGAATATCGAAGTGGGCCATGGAATGGTTTGATATTCAGCGCATTACCAGTTCTGAGCTCAAATTTTATTCTTCAAGATAACATGTCTTTCGATGCAACGGAAGTATACTACTTCATTTCAAAGGTCAATAATTCAAAGCATACTAGACTTGCAATGAACTGGACAGGTGAAATCCAACGCCATGTATGGGTAGAAAGCAGCCAAAGTTGGAACAAATTATGGTATGCACCTAATGATGAATGTGACAAATATGTTAGGTGTGGTCCATTTGGTATCTGTGATTCAAGTGCTTTCCCGGTATGCAGCTGTATTCAAGGGTTCCATGCAAAAAATCAGGTGGAATGGAATTTGAGAGACTTTTCTGAGGGGTGTGTGAGAAACACAGGACTGGATTGTGGGAAGGACAAGTTTCTGCGTGTGCAGCATGTGGAACTACCAGAAACAACGATAGTTTTTGTGAACATGAGCATGACACTTAATGATTGTGAAGATATGTGCATGAAAAATTGTTCTTGCACTGCTTTTGCAAACGTGGAGATTACTAATGGAGGGACTGGTTGTGTAATGTGGACTGATGAGCTCTTAGACATGAGGCAGTTTGCTGCTGGTGGCCAAGATCTTTATGTCAGATTAGCAGCTTCTGATGTTGTAGATGAAGATCACACAGGATCTGCTGGTAGCTCTGACAAGAAAAATAATGTAGGTAGGGTTGTCGGCATTACAGTTACTACAGCTACTGTGATTTTGGGAGTGAGCATGTATTGTTTATGGAAGAGGAGAAAATTGCAAAGTATTTGGAAATGGAAAACCATACAGAAAGGTATTACAAAATTAAAGTCCATCATTAGAAATCAGCATCCTGAGGTAACATTTAGAGATCCCTCAGGTGAAAGGAATATGGATGACCTGGAGTTGCCCTTGTTTGATTTCAATACCATAACAATGGCTACAAACAACTTCTCAGAAGCAAATGAACTCGGACAAGGAGGTTTTGGCTGTGTTTATAGGGGTAGGTTAGTTGATGGTCAAGAGATAGCTGTGAAAAGGTTATCAAAAACCTCTGGGCAAGGAATAGAAGAATTCAAGAATGAGGTCAAGTCAATTGCAAAGCTTCAACATAGAAATCTTGTACGACTGTTTGGTTGTTGCGTTGAGAAGGATGAGCAGATGTTGGTCTACGAATACATGGAAAATAACAGCCTAGACTCTATTTTATTTGACAAAGCCAAATGCTCCTTACTAGATTGGCAAATACGCTTCAACATTATATGTGGAATAGCTAGAGGGCTTCTTTATCTCCACCAAGATTCCAGGCTTAGAATTATCCACAGGGATCTCAAGGGAAGCAATGTTCTACTTGATAGAGAAATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAATTTTCGGCAGTGATCAAACACAAGCAAATACAAGGAGAGTTGTTGGAACATATGGCTATATGTCACCTGAATATGCAATGGACGGGCTCTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTGGTGCTAGAGATCATAAGTGGCAAAAAGAATAGAGGATTTTATTTATCAGAAGAGTCAAATCTTCTTGGAAATTCATGGAAGCACTGGAAAGAAGGGAAGGCATTGGAACTGATAGATTCATCATTTGCTAATTCCTATTCAGCATCGGAAGTTTTGAGATGCATACATGTTGGCCTCATATGTGTCCAAGAACGAGCAGAAGATAGGCCAACAATATCTTCTGTGGTCTTGATGTTGGGTAGTGAAACTGCATCAATGCCACAGCCTAAAAACCCTGGTTTTGTCCTTGGAAAGAGTCCTACTGATACTGACTCTTCAGCTAAGCAAGAAGAATCATACACAGTGAACCAAGTCACAATCACAGATGTAGATGCTCGGTAG 2541 0.3987 MRGSINLHIYFFWSFTLFSFFSNIVTSVNTLTAIQSLEINQTLVSPNQVFEFGFFRPSTSRWYLGIWYKDIPERIVVWVANRDTPLENSNGTLKIGDNGDLVLLNQTGKSIWSSNETTATNPVIQILDSGNLILIEANEKNTSNYLWQSFDYPTDTLLPGMKLGRNLETGMEHRLTSWKSLDDPSSGDFSYRMEYHGLPEFFLRNKQIKEYRSGPWNGLIFSALPVLSSNFILQDNMSFDATEVYYFISKVNNSKHTRLAMNWTGEIQRHVWVESSQSWNKLWYAPNDECDKYVRCGPFGICDSSAFPVCSCIQGFHAKNQVEWNLRDFSEGCVRNTGLDCGKDKFLRVQHVELPETTIVFVNMSMTLNDCEDMCMKNCSCTAFANVEITNGGTGCVMWTDELLDMRQFAAGGQDLYVRLAASDVVDEDHTGSAGSSDKKNNVGRVVGITVTTATVILGVSMYCLWKRRKLQSIWKWKTIQKGITKLKSIIRNQHPEVTFRDPSGERNMDDLELPLFDFNTITMATNNFSEANELGQGGFGCVYRGRLVDGQEIAVKRLSKTSGQGIEEFKNEVKSIAKLQHRNLVRLFGCCVEKDEQMLVYEYMENNSLDSILFDKAKCSLLDWQIRFNIICGIARGLLYLHQDSRLRIIHRDLKGSNVLLDREMNPKISDFGMARIFGSDQTQANTRRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIISGKKNRGFYLSEESNLLGNSWKHWKEGKALELIDSSFANSYSASEVLRCIHVGLICVQERAEDRPTISSVVLMLGSETASMPQPKNPGFVLGKSPTDTDSSAKQEESYTVNQVTITDVDAR 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00014 846 Pfam D-mannose binding lectin 76 179 IPR001480 -
Gabi2880g00014 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 790 - -
Gabi2880g00014 846 CDD PAN_AP_plant 339 421 - -
Gabi2880g00014 846 SUPERFAMILY Protein kinase-like (PK-like) 512 799 IPR011009 -
Gabi2880g00014 846 Gene3D Phosphorylase Kinase; domain 1 505 604 - -
Gabi2880g00014 846 Gene3D Hepatocyte Growth Factor 340 419 - -
Gabi2880g00014 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 494 604 - -
Gabi2880g00014 846 MobiDBLite consensus disorder prediction 808 833 - -
Gabi2880g00014 846 SMART serkin_6 529 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00014 846 Gene3D Transferase(Phosphotransferase) domain 1 605 810 - -
Gabi2880g00014 846 SMART ntp_6 341 420 IPR003609 -
Gabi2880g00014 846 Pfam Domain of unknown function (DUF3403) 801 846 IPR021820 GO:0004674
Gabi2880g00014 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 184 IPR036426 -
Gabi2880g00014 846 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Gabi2880g00014 846 Pfam PAN-like domain 341 406 IPR003609 -
Gabi2880g00014 846 CDD STKc_IRAK 535 799 - -
Gabi2880g00014 846 SMART blect_4 34 153 IPR001480 -
Gabi2880g00014 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 150 - -
Gabi2880g00014 846 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Gabi2880g00014 846 Pfam Protein tyrosine and serine/threonine kinase 532 797 IPR001245 GO:0004672|GO:0006468
Gabi2880g00014 846 CDD B_lectin 35 153 IPR001480 -
Gabi2880g00014 846 PIRSF SRK 3 846 IPR024171 GO:0004674
Gabi2880g00014 846 Gene3D - 22 150 IPR036426 -
Gabi2880g00014 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Gabi2880g00014 846 ProSiteProfiles Protein kinase domain profile. 529 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00014 846 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524
Gabi2880g00014 846 ProSiteProfiles PAN/Apple domain profile. 341 421 IPR003609 -
Gabi2880g00014 846 MobiDBLite consensus disorder prediction 818 833 - -
Gabi2880g00014 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 605 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00014 Gabi-Chr2880 106645 110230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00014 429 834 Receptor kinase-like Gene Family AT4G23190 50.000 7.97e-132 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00014 PK_Tyr_Ser-Thr 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00014 - - aip:107621503 1263.83