Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00013 ATGGATGACCTGGAGTTGCCATTGGTTGATTTTAATACCATAACAATGGCCACAAACTTCTTCTCTTCAGCGAATAAGCTTGGAGAAGGAGGCTTTGGAAGTGTTTACAGGGGTAGGTTGGCTGATGGCCAAGAAATTGCTGTGAAAAGGTTATCGACAAGCTCTGGACAAGGAAGTCAAGAATTCAAGAATGAGGTCAGATCAATTGCAAAGCTTCAACATCGAAATCTTGTAAGACTGTTAGGTTGCTGCACTGAGAAGGATGAGAAGATGTTGATCTATGAGTACATGGAAAATAACAGCCTAGATTCTGTTTTATTTGACAAATCAAAGAGTTCCTTGCTACACTGGCCAATGCGCTTCTACATTATATGTGGCATAGCCAAAGGGCTTCTTTATCTCCATCATGACTCCAGACTTAAAATTATCCATAGGGATCTCAAGGCAAGCAATATTCTTCTCGATAGAGAAATGAATCCAAAGATTTCAGATTTTGGGATTGCTAGAATTTTTGAGAGTGATCAAACTCAAGCGAATACAAAGAGAGTTGTTGGAACATATGGCTACATGTCACCTGAATACGCAATGGGTGGATTCTTTTCAGTGAAATCTGATGTTTTTAGTTTCGGGGTTCTAGTTCTAGAGATCATAAGTGGCAAGAAGAACAGAGGATTTTATTCCTCAGATGACCTAAATCTTCTTGGATATGCATGGAGACTCTGGAAAGAAGGGAGTGCATTGGAACTCATAGAATCATCATTTGCTGATTCATATTCAGTATCTGAAGTTCTAAGATGCATACATGTTGGCCTCATATGTGTCCAAGAACGAGCAGAAGATAGGCCAACAATGTCTTCTGTGGTCTTGATGTTGAATAGCGAAACTGCATCAATGCCACAGCCTAAACACCCTGGTTTCGTCCTTGGAAGGAGTCCCAGTGAAACTCATTCTTCTTCAGTTAATCAAGTCACAGTTACAGTGGTAGATGGCAGGTAG 996 0.4046 MDDLELPLVDFNTITMATNFFSSANKLGEGGFGSVYRGRLADGQEIAVKRLSTSSGQGSQEFKNEVRSIAKLQHRNLVRLLGCCTEKDEKMLIYEYMENNSLDSVLFDKSKSSLLHWPMRFYIICGIAKGLLYLHHDSRLKIIHRDLKASNILLDREMNPKISDFGIARIFESDQTQANTKRVVGTYGYMSPEYAMGGFFSVKSDVFSFGVLVLEIISGKKNRGFYSSDDLNLLGYAWRLWKEGSALELIESSFADSYSVSEVLRCIHVGLICVQERAEDRPTMSSVVLMLNSETASMPQPKHPGFVLGRSPSETHSSSVNQVTVTVVDGR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00013 331 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 96 - -
Gabi2880g00013 331 ProSitePatterns Protein kinases ATP-binding region signature. 27 49 IPR017441 GO:0005524
Gabi2880g00013 331 ProSiteProfiles Protein kinase domain profile. 21 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00013 331 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 330 - -
Gabi2880g00013 331 Pfam Protein tyrosine and serine/threonine kinase 24 289 IPR001245 GO:0004672|GO:0006468
Gabi2880g00013 331 Gene3D Phosphorylase Kinase; domain 1 3 96 - -
Gabi2880g00013 331 MobiDBLite consensus disorder prediction 296 321 - -
Gabi2880g00013 331 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 97 299 - -
Gabi2880g00013 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Gabi2880g00013 331 Gene3D Transferase(Phosphotransferase) domain 1 97 303 - -
Gabi2880g00013 331 SUPERFAMILY Protein kinase-like (PK-like) 7 319 IPR011009 -
Gabi2880g00013 331 PIRSF ILK 11 304 - -
Gabi2880g00013 331 Pfam Domain of unknown function (DUF3403) 293 331 IPR021820 GO:0004674
Gabi2880g00013 331 CDD STKc_IRAK 27 292 - -
Gabi2880g00013 331 SMART serkin_6 21 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00013 Gabi-Chr2880 97719 99960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00013 10 306 Receptor kinase-like Gene Family AT4G23190 62.126 7.09e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00013 PK_Tyr_Ser-Thr 3.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00013 - - aip:107621503 530.791