Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00012 ATGGTCCTCCATGGCTCCATCCGATTTGAGGAACAACTCTTGTCTTACCACTGCAACATGAGAGGTTCTACAATCTTCCATATATTCTTTTTTTTTACCTTCGCTTTTCTCGCATTCTTTTTCATTACTGTACTCTCCGTTGATACCTTAACTGCAACCCAATCTCTTGGAATTAACCAAACCCTTGTGTCTCCCGAGGAGGTGTTTGAGTTTGGATTCTTTAATGAAAGCAGTTCCAGATGGTACTTAGGTACATGGTACAAGGATATTCCTGATAAAATAGTGGTTTGGGTGGCAAACAGAGACACCCCACTTGAAAATTCCAAAGTAACTCTCAAGATTGGAGACAGAGGAAACCTGGTTCTTCTTAATCAAACAGGTTACTCCATATGGTCATCGAATCAAACCACTGCCACAAACCCAGTTCTTAGGCTTTTGGATAGTGGGAATTTGATTCTCATAGAAGCAAACGAGAAAAATACCAACAACTATCTATGGCAGAGCTTTGATTATCCAACAGATACTTTGTTACCAGGCATGAAGCTAGGTTGGAACCTTGACACTGGCGTGGAGCACCGTATAACATCATGGAAAAGCCAAGATGATCCATCAAGTGGAGATGCTTATTTCAGTCTAGAATACCATGGGATCCCTGAGGTTTTCTTATGGAACAAAAAGGAAAGGGTCTTTCGAACTGGACCATGGAATGGTGAGGTGTTTGGTGGAGTACCAATACTAAACACAATTGCTGTTCTTAATGATAGAGTTGTTGCTAATGAACATGAGGTGTATTACATCCCTTCAACGCTTAATCAATCTCGTTTATCCAGACTTGTTGTGAATTGGACGGGTCAAATTCAACGCTATGCATGGATAGAAAGTAGTCAAAGTTGGAGCAAAGTATGGTTTGCACCTGCTGGCGATTGTGATCATTATGGAGCTTGTGGTCCATTTGGTATATGTGACTCAAATGCTTTCCCTGTATGCAAGTGTATTGAAGGGTTCAATATCAAGAATCAGCAGCAATGGGATTTGAGAAATTTTTCTGATGGGTGTGCCAGGAAGACAAAATTGGAATGTGGGAATGACAAGTTTTTGCACAAGATGAACGTGCAGTTGCCAGATACAACATCGGTGTTTCTGGATAAGAACATGACAATATCAGAATGTAAAAATATGTGCCTGAAAGATTGTTCTTGCACTGCCTATGCTAATGCAGAGGTTACTAATGGTGGGACTGGTTGCGTGATGTGGAATGATACTCTCTTGGACGTGAGGCAATTTTCTGAAAGTGGCCAAGATCTATTCGTCAGATTAGCAGCTTCTGATGTAGATGACAGCGGGACAGGATTTGTTGGTGGGTCTGGCAAGAAAAAGAATGTAGGAAAGATTGCAGGCCTTGTAGTTACTGTAGCTATCGTAATTTTGGGAGTGAGTATATTCATTTTGTGGAAGAAGAGGAAATTGCATAGTATATCACAAGGGAACACGGAACAGAATGTTAATTTTGATAGAGGCCAGACAACGCTATCACCTGTGGCAATTTTTTCAAATAACATAGAACATTCAGATGAAAGGAACATGGATGACCTGGAGTTGCCATTGGTTGATTTTAATACCATAACAATGGCCACAAACTTCTTCTCTTCAGCGAATAAGCTTGGAGAAGGAGGCTTTGGAAGTGTTTACAGGGGTAGGTTGGCTGATGGCCAAGAAATTGCTGTGAAAAGGTTATCGACAAGCTCTGGACAAGGAAGTCAAGAATTCAAGAATGAGGTCAGATCAATTGCAAAGCTTCAACATCGAAATCTTGTAAGACTGTTAGGTTGCTGCACTGAGAAGGATGAGAAGATGTTGATCTATGAGTACATGGAAAATAACAGCCTAGATTCTGTTTTATTTGACAAATCAAAGAGTTCCTTGCTACACTGGCCAATGCGCTTCTACATTATATGTGGCATAGCCAAAGGGCTTCTTTATCTCCATCATGACTCCAGACTTAAAATTATCCATAGGGATCTCAAGGCAAGCAATATTCTTCTCGATAGAGAAATGAATCCAAAGATTTCAGATTTTGGGATTGCTAGAATTTTTGAGAGTGATCAAACTCAAGCGAATACAAAGAGAGTTGTTGGAACATATGGCTACATGTCACCTGAATACGCAATGGGTGGATTCTTTTCAGTGAAATCTGATGTTTTTAGTTTCGGGGTTCTAGTTCTAGAGATCATAAGTGGCAAGAAGAACAGAGGATTTTATTCCTCAGATGACCTAAATCTTCTTGGATATGCATGGAGACTCTGGAAAGAAGGGAGTGCATTGGAACTCATAGAATCATCATTTGCTGATTCATATTCAGTATCTGAAGTTCTAAGATGCATACATGTTGGCCTCATATGTGTCCAAGAACGAGCAGAAGATAGGCCAACAATGTCTTCTGTGGTCTTGATGTTGAATAGCGAAACTGCATCAATGCCACAGCCTAAACACCCTGGTTTCGTCCTTGGAAGGAGTCCCAGTGAAACTCATTCTTCTTCAGTTAATCAAGTCACAGTTACAGTGGTAGATGGCAGGTAG 2577 0.4063 MVLHGSIRFEEQLLSYHCNMRGSTIFHIFFFFTFAFLAFFFITVLSVDTLTATQSLGINQTLVSPEEVFEFGFFNESSSRWYLGTWYKDIPDKIVVWVANRDTPLENSKVTLKIGDRGNLVLLNQTGYSIWSSNQTTATNPVLRLLDSGNLILIEANEKNTNNYLWQSFDYPTDTLLPGMKLGWNLDTGVEHRITSWKSQDDPSSGDAYFSLEYHGIPEVFLWNKKERVFRTGPWNGEVFGGVPILNTIAVLNDRVVANEHEVYYIPSTLNQSRLSRLVVNWTGQIQRYAWIESSQSWSKVWFAPAGDCDHYGACGPFGICDSNAFPVCKCIEGFNIKNQQQWDLRNFSDGCARKTKLECGNDKFLHKMNVQLPDTTSVFLDKNMTISECKNMCLKDCSCTAYANAEVTNGGTGCVMWNDTLLDVRQFSESGQDLFVRLAASDVDDSGTGFVGGSGKKKNVGKIAGLVVTVAIVILGVSIFILWKKRKLHSISQGNTEQNVNFDRGQTTLSPVAIFSNNIEHSDERNMDDLELPLVDFNTITMATNFFSSANKLGEGGFGSVYRGRLADGQEIAVKRLSTSSGQGSQEFKNEVRSIAKLQHRNLVRLLGCCTEKDEKMLIYEYMENNSLDSVLFDKSKSSLLHWPMRFYIICGIAKGLLYLHHDSRLKIIHRDLKASNILLDREMNPKISDFGIARIFESDQTQANTKRVVGTYGYMSPEYAMGGFFSVKSDVFSFGVLVLEIISGKKNRGFYSSDDLNLLGYAWRLWKEGSALELIESSFADSYSVSEVLRCIHVGLICVQERAEDRPTMSSVVLMLNSETASMPQPKHPGFVLGRSPSETHSSSVNQVTVTVVDGR 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00012 858 Pfam Protein tyrosine and serine/threonine kinase 551 816 IPR001245 GO:0004672|GO:0006468
Gabi2880g00012 858 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 514 623 - -
Gabi2880g00012 858 ProSiteProfiles PAN/Apple domain profile. 360 440 IPR003609 -
Gabi2880g00012 858 FunFam Receptor-like serine/threonine-protein kinase SD1-8 42 169 - -
Gabi2880g00012 858 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 32 809 - -
Gabi2880g00012 858 ProSiteProfiles Bulb-type lectin domain profile. 47 166 IPR001480 -
Gabi2880g00012 858 Pfam D-mannose binding lectin 95 198 IPR001480 -
Gabi2880g00012 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 669 681 IPR008271 GO:0004672|GO:0006468
Gabi2880g00012 858 ProSiteProfiles Protein kinase domain profile. 548 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00012 858 SMART ntp_6 360 439 IPR003609 -
Gabi2880g00012 858 Pfam PAN-like domain 360 425 IPR003609 -
Gabi2880g00012 858 ProSitePatterns Protein kinases ATP-binding region signature. 554 576 IPR017441 GO:0005524
Gabi2880g00012 858 PIRSF SRK 20 858 IPR024171 GO:0004674
Gabi2880g00012 858 MobiDBLite consensus disorder prediction 823 848 - -
Gabi2880g00012 858 Pfam Domain of unknown function (DUF3403) 820 858 IPR021820 GO:0004674
Gabi2880g00012 858 Gene3D - 43 169 IPR036426 -
Gabi2880g00012 858 CDD STKc_IRAK 554 819 - -
Gabi2880g00012 858 Gene3D Transferase(Phosphotransferase) domain 1 624 829 - -
Gabi2880g00012 858 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 203 IPR036426 -
Gabi2880g00012 858 SMART serkin_6 548 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00012 858 SMART blect_4 53 172 IPR001480 -
Gabi2880g00012 858 Pfam S-locus glycoprotein domain 230 338 IPR000858 GO:0048544
Gabi2880g00012 858 CDD PAN_AP_plant 356 440 - -
Gabi2880g00012 858 CDD B_lectin 53 172 IPR001480 -
Gabi2880g00012 858 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 624 826 - -
Gabi2880g00012 858 Gene3D Hepatocyte Growth Factor 358 439 - -
Gabi2880g00012 858 SUPERFAMILY Protein kinase-like (PK-like) 534 846 IPR011009 -
Gabi2880g00012 858 Gene3D Phosphorylase Kinase; domain 1 514 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00012 Gabi-Chr2880 96363 99960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00012 462 833 Receptor kinase-like Gene Family AT4G23190 53.927 1.44e-132 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00012 PK_Tyr_Ser-Thr 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00012 - - aip:107621503 1182.93