Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00011 ATGGTCCTCCATGGCTCCATCCGATTTGAGGAACAACTCTTGTCTTACCACTGCAACATGAGAGGTTCTACAATCTTCCATATATTCTTTTTTTTTACCTTCGCTTTTCTCGCATTCTTTTTCATTACTGTACTCTCCGTTGATACCTTAACTGCAACCCAATCTCTTGGAATTAACCAAACCCTTGTGTCTCCCGAGGAGGTGTTTGAGTTTGGATTCTTTAATGAAAGCAGTTCCAGATGGTACTTAGGTACATGGTACAAGGATATTCCTGATAAAATAGTGGTTTGGGTGGCAAACAGAGACACCCCACTTGAAAATTCCAAAGTAACTCTCAAGATTGGAGACAGAGGAAACCTGGTTCTTCTTAATCAAACAGGTTACTCCATATGGTCATCGAATCAAACCACTGCCACAAACCCAGTTCTTAGGCTTTTGGATAGTGGGAATTTGATTCTCATAGAAGCAAACGAGAAAAATACCAACAACTATCTATGGCAGAGCTTTGATTATCCAACAGATACTTTGTTACCAGGCATGAAGCTAGGTTGGAACCTTGACACTGGCGTGGAGCACCGTATAACATCATGGAAAAGCCAAGATGATCCATCAAGTGGAGATGCTTATTTCAGTCTAGAATACCATGGGATCCCTGAGGTTTTCTTATGGAACAAAAAGGAAAGGGTCTTTCGAACTGGACCATGGAATGGTGAGGTGTTTGGTGGAGTACCAATACTAAACACAATTGCTGTTCTTAATGATAGAGTTGTTGCTAATGAACATGAGGTGTATTACATCCCTTCAACGCTTAATCAATCTCGTTTATCCAGACTTGTTGTGAATTGGACGGGTCAAATTCAACGCTATGCATGGATAGAAAGTAGTCAAAGTTGGAGCAAAGTATGGTTTGCACCTGCTGGCGATTGTGATCATTATGGAGCTTGTGGTCCATTTGGTATATGTGACTCAAATGCTTTCCCTGTATGCAAGTGTATTGAAGGGTTCAATATCAAGAATCAGCAGCAATGGGATTTGAGAAATTTTTCTGATGGGTGTGCCAGGAAGACAAAATTGGAATGTGGGAATGACAAGTTTTTGCACAAGATGAACGTGCAGTTGCCAGATACAACATCGGTGTTTCTGGATAAGAACATGACAATATCAGAATGTAAAAATATGTGCCTGAAAGATTGTTCTTGCACTGCCTATGCTAATGCAGAGGTTACTAATGGTGGGACTGGTTGCGTGATGTGGAATGATACTCTCTTGGACGTGAGGCAATTTTCTGAAAGTGGCCAAGATCTATTCGTCAGATTAGCAGCTTCTGATGTAGGCAAGTTTCTTTCATGCCTTGTAGTTACTGTAGCTATCGTAATTTTGGGAGTGAGTATATTCATTTTGTGGAAGAAGAGGAAATTGCATAGTATATCACAAGGGAACACGGAACAGAATGTTAATTTTGATAGAGGCCAGACAACGCTATCACCTGTGGCAATTTTTTCAAATAACATAGAACATTCAGATGAAAGGAACATGGATGACCTGGAGTTGCCATTGGTTGATTTTAATACCATAACAATGGCCACAAACTTCTTCTCTTCAGCGAATAAGCTTGGAGAAGGAGGCTTTGGAAGTGTTTACAGGGGTAGGTTGGCTGATGGCCAAGAAATTGCTGTGAAAAGGTTATCGACAAGCTCTGGACAAGGAAGTCAAGAATTCAAGAATGAGGTCAGATCAATTGCAAAGCTTCAACATCGAAATCTTGTAAGACTGTTAGGTTGCTGCACTGAGAAGGATGAGAAGATGTTGATCTATGAGTACATGGAAAATAACAGCCTAGATTCTGTTTTATTTGACAAATCAAAGAGTTCCTTGCTACACTGGCCAATGCGCTTCTACATTATATGTGGCATAGCCAAAGGGCTTCTTTATCTCCATCATGACTCCAGACTTAAAATTATCCATAGGGATCTCAAGGCAAGCAATATTCTTCTCGATAGAGAAATGAATCCAAAGATTTCAGATTTTGGGATTGCTAGAATTTTTGAGAGTGATCAAACTCAAGCGAATACAAAGAGAGTTGTTGGAACATATGGCTACATGTCACCTGAATACGCAATGGGTGGATTCTTTTCAGTGAAATCTGATGTTTTTAGTTTCGGGGTTCTAGTTCTAGAGATCATAAGTGGCAAGAAGAACAGAGGATTTTATTCCTCAGATGACCTAAATCTTCTTGGATATGCATGGAGACTCTGGAAAGAAGGGAGTGCATTGGAACTCATAGAATCATCATTTGCTGATTCATATTCAGTATCTGAAGTTCTAAGATGCATACATGTTGGCCTCATATGTGTCCAAGAACGAGCAGAAGATAGGCCAACAATGTCTTCTGTGGTCTTGATGTTGAATAGCGAAACTGCATCAATGCCACAGCCTAAACACCCTGGTTTCGTCCTTGGAAGGAGTCCCAGTGAAACTCATTCTTCTTCAGTTAATCAAGTCACAGTTACAGTGGTAGATGGCAGGTAG 2529 0.4045 MVLHGSIRFEEQLLSYHCNMRGSTIFHIFFFFTFAFLAFFFITVLSVDTLTATQSLGINQTLVSPEEVFEFGFFNESSSRWYLGTWYKDIPDKIVVWVANRDTPLENSKVTLKIGDRGNLVLLNQTGYSIWSSNQTTATNPVLRLLDSGNLILIEANEKNTNNYLWQSFDYPTDTLLPGMKLGWNLDTGVEHRITSWKSQDDPSSGDAYFSLEYHGIPEVFLWNKKERVFRTGPWNGEVFGGVPILNTIAVLNDRVVANEHEVYYIPSTLNQSRLSRLVVNWTGQIQRYAWIESSQSWSKVWFAPAGDCDHYGACGPFGICDSNAFPVCKCIEGFNIKNQQQWDLRNFSDGCARKTKLECGNDKFLHKMNVQLPDTTSVFLDKNMTISECKNMCLKDCSCTAYANAEVTNGGTGCVMWNDTLLDVRQFSESGQDLFVRLAASDVGKFLSCLVVTVAIVILGVSIFILWKKRKLHSISQGNTEQNVNFDRGQTTLSPVAIFSNNIEHSDERNMDDLELPLVDFNTITMATNFFSSANKLGEGGFGSVYRGRLADGQEIAVKRLSTSSGQGSQEFKNEVRSIAKLQHRNLVRLLGCCTEKDEKMLIYEYMENNSLDSVLFDKSKSSLLHWPMRFYIICGIAKGLLYLHHDSRLKIIHRDLKASNILLDREMNPKISDFGIARIFESDQTQANTKRVVGTYGYMSPEYAMGGFFSVKSDVFSFGVLVLEIISGKKNRGFYSSDDLNLLGYAWRLWKEGSALELIESSFADSYSVSEVLRCIHVGLICVQERAEDRPTMSSVVLMLNSETASMPQPKHPGFVLGRSPSETHSSSVNQVTVTVVDGR 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00011 842 MobiDBLite consensus disorder prediction 807 832 - -
Gabi2880g00011 842 CDD STKc_IRAK 538 803 - -
Gabi2880g00011 842 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 32 793 - -
Gabi2880g00011 842 ProSiteProfiles PAN/Apple domain profile. 360 440 IPR003609 -
Gabi2880g00011 842 Pfam Protein tyrosine and serine/threonine kinase 535 800 IPR001245 GO:0004672|GO:0006468
Gabi2880g00011 842 ProSiteProfiles Bulb-type lectin domain profile. 47 166 IPR001480 -
Gabi2880g00011 842 Gene3D Phosphorylase Kinase; domain 1 498 607 - -
Gabi2880g00011 842 Pfam Domain of unknown function (DUF3403) 804 842 IPR021820 GO:0004674
Gabi2880g00011 842 Pfam D-mannose binding lectin 95 198 IPR001480 -
Gabi2880g00011 842 PIRSF SRK 20 842 IPR024171 GO:0004674
Gabi2880g00011 842 Pfam S-locus glycoprotein domain 230 338 IPR000858 GO:0048544
Gabi2880g00011 842 Gene3D Transferase(Phosphotransferase) domain 1 608 813 - -
Gabi2880g00011 842 FunFam Receptor-like serine/threonine-protein kinase SD1-8 42 169 - -
Gabi2880g00011 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 498 607 - -
Gabi2880g00011 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 608 810 - -
Gabi2880g00011 842 SMART ntp_6 360 439 IPR003609 -
Gabi2880g00011 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Gabi2880g00011 842 Gene3D - 43 169 IPR036426 -
Gabi2880g00011 842 SMART serkin_6 532 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00011 842 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Gabi2880g00011 842 SMART blect_4 53 172 IPR001480 -
Gabi2880g00011 842 Pfam PAN-like domain 360 425 IPR003609 -
Gabi2880g00011 842 CDD PAN_AP_plant 356 440 - -
Gabi2880g00011 842 CDD B_lectin 53 172 IPR001480 -
Gabi2880g00011 842 ProSiteProfiles Protein kinase domain profile. 532 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2880g00011 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 203 IPR036426 -
Gabi2880g00011 842 Gene3D Hepatocyte Growth Factor 358 439 - -
Gabi2880g00011 842 SUPERFAMILY Protein kinase-like (PK-like) 518 830 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00011 Gabi-Chr2880 96363 99960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00011 455 817 Receptor kinase-like Gene Family AT4G23190 54.768 2.81e-132 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2880g00011 PK_Tyr_Ser-Thr 4.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00011 - - aip:107621503 1161.75