LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2880g00010	ATGAAGCTTGGTTGGAACTTCAAAACTGGTTTGAACCGGCATTTGACTTCTTGGAAAAGCACTGATGATCCGTCTTCAGGAGAATATACCTACAGTGTGGATCCACATGGCCTTCCTCAGCTTTTTCTTCACAAGGGGAACAAGAAGGTCTTCAGAAGTGGACCATGGTATGGACAACAATTTAAAGGTGACCCAGTTCTCAGGGAAAATCCAGTTTTCAAACCCATATTTGTTTTTGATTTTGATGAAGTGTCTTACTCTTATGAGACTAAAGACAACATCATTTCAAGATTTGTGCTTAGTCAATCTGGTTTGATTCAGCACTTCTCATGGAATGATCATCATTCAAGTTGGTTCTCTGAATTCACAATTCAAGGTGATCGTTGTGATGATTATGGCCTTTGTGGTGCTTATGGCACCTGTAACATCAAAAGCTCCCCGGTTTGCAAGTGTTTGAACGGTTTTGAGCCTAGGCTTCAACAAGAATGGAGAATGCTTAAGTGGTCTGGTGGATGTGTCAGCAAGAATTCACAGGTTTGCAGAAATGGAGATGCATTCAAACAGTTTACAGGAATGAAACTACCAGATGCTGCTGAGTTTCATACAAACTATAGCATCAGCATTGATCACTGTGAGGCAGAATGCTCCAAGAACTGCTCTTGTGTAGCTTATGCTAAACTAGATATAAACGCAAGTGGCAAAGGCTGCATTGCTTGGTTTGGTGATCTATTTGATATAAGAGAGGTTTCTGTGAATGGTCAAGATTTCTACGTGAGAGTTCCAGTCTCAGAACTAGATTCAAATGTTGACGGGAACAAAAGGAAGAAACTCATACTGCTTCCTGTGACTGTATCGGTAACCTCAACAATTATTGTCTCAGCATTATGGTTGATAATTAAGAAATGGAGAAGAAATGGAGCCAGAGAGACAGATTTTCAATTGAGTGCTGGCAGAGCTAGAAGTGAGAGGAATGAATTTGAACTCCCATCATTTGAGATTGCCATAATTGAAGCCGCCACTGGGAATTTCTCTATTTACAATAAGATTGGAGAAGGTGGATTTGGTCCTGTATATAAAGGTCAACTTCCATCAGGAAGGGAAATAGCAGTGAAAAGGCTCTCAGAGAGTTCCGGACAAGGCCTGCAGGAGTTCAAGAATGAGGTTATGTTAATCTCCCAACTTCAGCATCGAAATCTTGTCAAGCTTCTGGGTTGTTGCATTCATGGAGAAGATAAAATGTTGGTCTATGAATACATGCCAAACAGAAGCTTGGACTCCTTATTATTTGATGAAACAAAGCGTTCTGTTCTCAGTTGGCAAAGGAGGCTGGACATTATTACTGGCATTGCTAGGGGACTTGTCTACCTTCACAGAGATTCAAGACTAAGAATAATCCATAGAGACCTGAAAGCAAGCAATGTTCTTTTAGATAGTGAAATGAACCCAAAAATTTCAGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGCAAAGACCAAGAGAGTAGTTGGAACCTATGGATATATGCCCCCAGAGTATGCAATAGATGGACACTTCTCTTTCAAATCGGATGTTTTTAGCTTTGGGGTGTTACTCTTGGAGCTGTTGAGCGGCAAGAAAAACAAAGGATTTCTTCACCCGGATCACAAACTGAATCTCCTAGGCCATGCATGGAAGCTTTGTAATGAAGGTAGGGACTTGGAGCTGATGGATCCGTTGCTCGAGAATGAGTTCCCAACTTCAGGAGTTCAAAGGTGTATTCAAGTGGGTCTTTTATGCGTTCAACAGCTCCCAGAAGAGAGGCCAACAATGCCATCAGTGCTATTGATGTTGGAGAGTGAGAGTGTGTTGCTACCCAAACCTGGAAGACCAGGATTATATTCTGAGAGATGTTTCTCGGAGACAGATTCATCATCACGTGGTAGACTAAATTCAGGTTCTAATGACTTGACTGTTACTTTAGTAGAGGGTCGTTAG	1986	0.4144	MKLGWNFKTGLNRHLTSWKSTDDPSSGEYTYSVDPHGLPQLFLHKGNKKVFRSGPWYGQQFKGDPVLRENPVFKPIFVFDFDEVSYSYETKDNIISRFVLSQSGLIQHFSWNDHHSSWFSEFTIQGDRCDDYGLCGAYGTCNIKSSPVCKCLNGFEPRLQQEWRMLKWSGGCVSKNSQVCRNGDAFKQFTGMKLPDAAEFHTNYSISIDHCEAECSKNCSCVAYAKLDINASGKGCIAWFGDLFDIREVSVNGQDFYVRVPVSELDSNVDGNKRKKLILLPVTVSVTSTIIVSALWLIIKKWRRNGARETDFQLSAGRARSERNEFELPSFEIAIIEAATGNFSIYNKIGEGGFGPVYKGQLPSGREIAVKRLSESSGQGLQEFKNEVMLISQLQHRNLVKLLGCCIHGEDKMLVYEYMPNRSLDSLLFDETKRSVLSWQRRLDIITGIARGLVYLHRDSRLRIIHRDLKASNVLLDSEMNPKISDFGMARMFGGDQTEAKTKRVVGTYGYMPPEYAIDGHFSFKSDVFSFGVLLLELLSGKKNKGFLHPDHKLNLLGHAWKLCNEGRDLELMDPLLENEFPTSGVQRCIQVGLLCVQQLPEERPTMPSVLLMLESESVLLPKPGRPGLYSERCFSETDSSSRGRLNSGSNDLTVTLVEGR	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2880g00010	661	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	304	418	-	-
	Gabi2880g00010	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	464	476	IPR008271	GO:0004672\|GO:0006468
	Gabi2880g00010	661	Pfam	S-locus glycoprotein domain	51	158	IPR000858	GO:0048544
	Gabi2880g00010	661	SMART	serkin_6	343	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2880g00010	661	CDD	PAN_AP_plant	180	261	-	-
	Gabi2880g00010	661	Gene3D	Transferase(Phosphotransferase) domain 1	419	620	-	-
	Gabi2880g00010	661	ProSiteProfiles	Protein kinase domain profile.	343	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2880g00010	661	SUPERFAMILY	Protein kinase-like (PK-like)	327	624	IPR011009	-
	Gabi2880g00010	661	Gene3D	Phosphorylase Kinase; domain 1	307	418	-	-
	Gabi2880g00010	661	CDD	STKc_IRAK	349	615	-	-
	Gabi2880g00010	661	SUPERFAMILY	alpha-D-mannose-specific plant lectins	15	58	IPR036426	-
	Gabi2880g00010	661	Pfam	PAN-like domain	180	246	IPR003609	-
	Gabi2880g00010	661	ProSiteProfiles	EGF-like domain profile.	125	161	IPR000742	-
	Gabi2880g00010	661	PANTHER	BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN	1	605	-	-
	Gabi2880g00010	661	Pfam	Protein tyrosine and serine/threonine kinase	345	610	IPR001245	GO:0004672\|GO:0006468
	Gabi2880g00010	661	Gene3D	Hepatocyte Growth Factor	177	258	-	-
	Gabi2880g00010	661	ProSiteProfiles	PAN/Apple domain profile.	180	261	IPR003609	-
	Gabi2880g00010	661	SMART	ntp_6	181	260	IPR003609	-
	Gabi2880g00010	661	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	419	622	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2880g00010	Gabi-Chr2880	82141	85398	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2880g00010	280	629	Receptor kinase-like Gene Family	AT4G05200	55.143	3.13e-127	390

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gabi2880g00010		PK_Tyr_Ser-Thr	8.6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2880g00010	-		-	aprc:113864715	1194.87